Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4330 150 2e-31 seq1055 123 2e-23 >seq4330 Length=10061 Score = 150 bits (166), Expect = 2e-31 Identities = 905/1423 (64%), Gaps = 50/1423 (4%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| || ||||| |||||||| || ||| | ||| ||||| ||||| || | Sbjct 3378 GCGCATGTAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGG- 3320 Query 148013 CATGAGCGT---GTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 |||| | | |||||||| |||| | | |||| |||||| |||||| || Sbjct 3319 --TGAGTTTACTGATCGTCGGGT-CGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAA 3263 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 || | || ||||||||||| | || || | | || ||| | ||| || ||||| | Sbjct 3262 TGTAAGCACCACGGTCAGCCGACAGATCTAACAC-CGATTTCTGCTTGATTTCCCACACT 3204 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGC----TGCACCGAGCC 148183 || |||||| | |||| ||| || |||||| ||| | | | ||||| || || Sbjct 3203 GTTTTGTACTTCTCTTTGACATGGTCCGGAATG--GTC--TTCACCTTTTGCACAGAACC 3148 Query 148184 GCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTC 148243 |||| | ||||| || || | ||| ||| | | | || |||||||| || Sbjct 3147 ACGGTCGTTCAGTATCTGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTC 3088 Query 148244 ATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACAC 148303 | ||||| |||| ||||| | | ||||| || || ||||| || || |||| Sbjct 3087 TTTCATCAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACAT 3028 Query 148304 GTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGT 148363 ||| ||| |||| || | ||||||||||| || | ||||| || |||| || || Sbjct 3027 GTTCGACGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGT 2968 Query 148364 GGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAG 148423 ||||| || || |||| |||||||| | ||| | || | | || ||||| Sbjct 2967 AGGCATAGGAGCCACTAGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAA 2908 Query 148424 AGCCGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 || | ||||||||| || | ||||| || || |||||||||| |||| | || Sbjct 2907 GGCGGTCCAGTCCCAAAGACCAGAGGACGGGGTGACACCCCACATGTCGAACTGGAAGAT 2848 Query 148481 GCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTC 148540 || ||| || ||| ||||| | | |||||| || | | || | || Sbjct 2847 ACCCTTGCTGGCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTC 2788 Query 148541 GCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CAGC 148598 | | ||| | || | || || || ||||| ||| | | |||| || || | Sbjct 2787 CATGGATGTCTCCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCA-C 2729 Query 148599 GCCGCCGACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTG 148657 | ||| |||||||||| || ||||| || | | || || ||||| || ||||| Sbjct 2728 G-AGCCTGCTCGCTTTCGAAC-GCATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTG 2671 Query 148658 TACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGCGGAT 148716 || || | ||| | || ||||| |||||||| || || |||| | | ||| | Sbjct 2670 AACACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGC-CTCTGCAACCGGGT 2612 Query 148717 AGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCA 148776 ||| |||| ||| || | ||||| ||| || || |||||||| || | || Sbjct 2611 AGTAGTTGACGTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTCACATCATACA 2552 Query 148777 GCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTA 148833 || | | ||| | ||| || || | | | ||| | || | ||| || | Sbjct 2551 GCTTCTTGTAGTCGAAGACACCGTCCTCCAC-AAACTTAGGT--AAAGCCACAGACGCCA 2495 Query 148834 GATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGC 148893 |||||||||||| ||||||||| | | ||||| | | ||| ||||| || | Sbjct 2494 AGTTGCACACGGCCACCTCATCCGGCGACGTATACTCCATTACCTCACAGCACAAGTTAC 2435 Query 148894 TGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACA 148953 || || |||| ||| | |||| || ||| ||| | |||| |||||||| | | Sbjct 2434 TGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGA 2375 Query 148954 GCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTA---TGAACCGATGCAGGTCCT 149010 |||| | || |||| || || | ||||| || | | |||||| || || | || Sbjct 2374 GCATAAATGGCACGCCCGTCTCAATCTGCGCATCTAAAATGCTGAACC-AT--AGCTGCT 2318 Query 149011 GCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCG 149069 |||| | | | ||| | ||| ||||||| ||||| ||| ||| |||| Sbjct 2317 GCGCATTAATTGTCTTGCGAG-CGCGTCCCTCCTTTTCGTACTTTTCATAAAGCGTCTCG 2259 Query 149070 AACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCAC 149129 ||| | || || |||| |||| |||| | || | || ||| || | | |||| Sbjct 2258 AACTCGTCTCCCCAGCACTCGTAGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCAC 2199 Query 149130 ACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGG 149189 ||| | || | ||| || |||||||||||||| || | ||| || ||||| | | | Sbjct 2198 TTGCCATTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAG 2139 Query 149190 T--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATA 149247 | ||||| | |||| ||| || ||| ||||||| || | || | Sbjct 2138 TCACGCGCTCGGTGCA--ATTCATTACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACA 2081 Query 149248 TGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCT 149304 ||| || ||||||||||| | ||| | || | | || ||||| ||| || || | Sbjct 2080 CGTCGGCATGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTT 2021 Query 149305 GGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||| |||| || || ||| ||||||||| || | ||| || Sbjct 2020 GGTCCACGTATCGGGCCGTGTCGTTAAACACCCGTAACATGGG 1978 >seq1055 Length=24595 Score = 123 bits (136), Expect = 2e-23 Identities = 143/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||| |||||||| || || ||| |||| ||| || ||||||||||| || | | Sbjct 13499 TTCTGAATATTGTAGTCCGACAGCGT--ACGACCGTCTTCCAGCTGCTTGCCAGCAAAGA 13556 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 | || ||||||||||| || || || ||||||||||| ||| || ||||||| | | Sbjct 13557 TCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 13616 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 ||| ||||| ||||||||||| | || | ||| ||||| |||| ||| ||||| | Sbjct 13617 CAATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAA 13676 Query 133651 AAATCTGCATG 133661 | ||||||||| Sbjct 13677 AGATCTGCATG 13687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483394290411880