Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3976 237 2e-57 seq4330 179 5e-40 >seq3976 Length=80323 Score = 237 bits (262), Expect = 2e-57 Identities = 400/576 (69%), Gaps = 5/576 (1%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || ||||| | |||||||| ||||| || || | || |||||||| |||||||| || Sbjct 36103 CCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCAGACCACGTTTC 36162 Query 39698 TTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 ||||||||||| || | |||| ||| | ||||| ||||| ||||||||||| | ||||| Sbjct 36163 TTGAGCCAAAAGATAG-AGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTACCGAAGCAAA 36221 Query 39757 TGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTAT---CCACTTCTGTGCCCAATC 39813 || | || | || |||| || || | |||||| ||||||||| Sbjct 36222 CGCCAATAGACGTTCCGCGTACGATGACACACGGGGGTCACACCACTTGAGTGCCCAATT 36281 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 ||||||||||| ||||| || || || || |||||| | ||||| || ||| || | Sbjct 36282 GGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGATCTTTCTCTAC 36341 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | || |||| ||||||||| || | ||| ||| | || || || || || || || Sbjct 36342 AGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGAATATTCTCGAT 36401 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT 39993 || || ||||| |||||||| || | ||||||| | ||| || || | ||| | Sbjct 36402 AGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTAAAGTT 36461 Query 39994 TTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTT 40053 || | ||| |||||||| || |||||||| || |||||||| || | ||||| || Sbjct 36462 CATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTT 36521 Query 40054 AATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATC 40113 |||||||| ||||| | || | | | ||||| || |||| ||| | | || Sbjct 36522 AATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTC 36581 Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 | ||||| |||||||| ||||| ||||| || || |||||||| | ||| | || Sbjct 36582 GAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTT 36641 Query 40174 ATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 | || || ||||||| ||||| | ||| || || Sbjct 36642 CTCCTGAATAGGAAAAAGCACAAAACGATTCGGGTT 36677 >seq4330 Length=10061 Score = 179 bits (198), Expect = 5e-40 Identities = 909/1438 (63%), Gaps = 12/1438 (1%) Strand=Plus/Minus Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT-CTAGACTATCGAATGG 69071 ||||| || || || ||||| ||||| || || || | || | || | || ||||| | Sbjct 2765 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCG-CTTTCGAACGC 2707 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 ||| | | ||||| || ||||| |||| |||||||| ||||| || | ||| | || Sbjct 2706 ATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTG 2647 Query 69132 TCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 69190 | | | || || ||||| ||| |||| || || || || || | || |||| || | Sbjct 2646 GCGCATGTTGGA-CTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGT 2588 Query 69191 TAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCAT 69250 |||| || ||| || || || ||| || | || || | || || || | Sbjct 2587 TAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGT 2528 Query 69251 CTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAAT 69310 | |||||| || | || ||||| || | || || || || ||||||| | Sbjct 2527 CCTCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCG 2468 Query 69311 TTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370 | ||| | |||| ||| || | ||||| || ||| || || ||||| |||| Sbjct 2467 ACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCT 2408 Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430 | || ||| ||| |||||||| | || ||||| || || || ||||||| Sbjct 2407 GGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCT 2348 Query 69431 GAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAA-CGCTTC 69489 | | || | ||| ||| | | ||||| ||| |||||| | ||| || Sbjct 2347 GCGCATCTAAAATGCTGAACCATAGCTGCTGCGCATTAATT---GTCTTGCGAGCGCGTC 2291 Query 69490 TCT--TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 || ||||| || | | ||| ||| ||||| || |||||||| || | | Sbjct 2290 CCTCCTTTTCGTACTTTTCATAAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAG 2231 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 ||||| ||| || ||||| | || |||| ||| | | | || |||||||||| Sbjct 2230 CAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAA 2171 Query 69608 ATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | ||||| |||||||| ||||| || || || || | | || | |||||| || Sbjct 2170 ACAGATCAGGAATCCATAGAGCGTAGAATAAG-TCACGCGCTCGGTGCAATTCATTACCG 2112 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 ||||| || || |||||||| | | || | |||||| || || | ||||| Sbjct 2111 TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATATA 2052 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | ||| ||||| ||| || || || | ||||| ||| |||| ||| | Sbjct 2051 GCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAAAC 1992 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || | | ||| ||||| || || ||||| |||||| || ||| |||||| || Sbjct 1991 ACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTGTTA 1932 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || || || || ||| | || || || || ||| ||| || || ||| Sbjct 1931 GTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCACGCA 1872 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | |||||||||||||| ||||| || || |||||| ||| || | |||| Sbjct 1871 CATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAAA 1812 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 || |||| ||| | | |||||| |||||||| || || || | || ||||| Sbjct 1811 CACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGAGTA 1752 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGA 70086 || | || | ||| | || | ||| || || | ||| | || |||| || || Sbjct 1751 AAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTCTTGTGG 1692 Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATT 70146 || |||| || || ||||| | | || || ||||| || || ||| ||| | Sbjct 1691 ATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGACTTTTCCATTAACA 1632 Query 70147 TTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 || || ||| ||| || || ||||| || || ||||||| || |||||| | Sbjct 1631 CGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAAGTCCCGG 1572 Query 70207 TCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTA 70266 |||| ||| || |||| ||||| | ||| || | | | || || || ||| | Sbjct 1571 TCGTGAATGATTGCAGAGTTTAGCTCATCTTTGTGCTGCATCACGATCTCGTATACATCA 1512 Query 70267 GGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCC 70326 | || | ||||| | || |||| || |||| ||| || | | Sbjct 1511 TCAGCTATGAGCGGAGCCGCTGCTCCTGTTTTCTCATGCACATTCTTGTGGAACACGTTA 1452 Query 70327 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCT 70386 || |||||||| | || ||||| | ||||||||||||||| | ||| || | || Sbjct 1451 ATGTTGTCACTAAAGACCTTGTTTGTATTCTTGTGTAAATTTGACACGGCAATACGTGCC 1392 Query 70387 GCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTA 70444 ||||| | | | |||| |||||||| ||| | ||| ||| | || ||||||| Sbjct 1391 GCTAGCTTGGAAAAGTCTGGATGTTGGGTACTTTGGCAAGCGGCTGTCTCAGCAGCTA 1334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686871131638680