Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3976 140 3e-28 seq2452 87.8 1e-12 >seq3976 Length=80323 Score = 140 bits (154), Expect = 3e-28 Identities = 393/590 (67%), Gaps = 15/590 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | ||||| ||||| | | ||| | |||||||||||||| ||||| |||| Sbjct 36665 TTTGTGCTTTTTCCTATTCAGGAGAACGACGTGTGGCAAATGTACAAGAAAGCCGAGGCT 36606 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || || |||||||| ||||| | || ||| | || | |||||| || | Sbjct 36605 TCGTTCTGGACAGCCGAAGAGCTCGACTTGGTGCATGATCTCAAGGATTGGAAAACACTT 36546 Query 43820 AAACCACAA-GAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 | |||| ||| |||||||| | | | | || || |||||||| || || || Sbjct 36545 ACGG-ACAATGAACGTCATTTTATTAAGCATGTGCTT--GCCTTTTTTGCAGCCAGTGAT 36489 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAAGC 43935 || || || ||||| ||| | | | ||| |||| ||||| ||| |||| ||||| Sbjct 36488 GGCATTGTGAATGAGAATCTCGCCATGAACTTTA-GCAATGAAGTGCAAGTACCTGAAGC 36430 Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 || || ||||| || ||||||||||| || || |||||||| ||||| | || || Sbjct 36429 TCGCTGCTTTTACGGTTTTCAAATTGCTATCGAGAATATTCACTCGGAGGTCTATTCACT 36370 Query 43996 TCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA 44055 || || ||||| || || || ||| ||||| ||| | | ||| || || Sbjct 36369 GCTTATTGATACATATATTAAGAATGCTGTAGAGAAAGATCATCTCCTGCGTGCTATTGA 36310 Query 44056 AACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATG 44114 || | || || | | || | ||||| | ||||| || || ||| | | || Sbjct 36309 TACGATCCCATGTG-TCAAGAAGAAAGCCAATTGGGCACTCAAGTGGTGTGACCCCCGTG 36251 Query 44115 ATTCTTTT---GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 || | | ||||| || | |||||||| || |||||||||||||| || | Sbjct 36250 TGTCATCGTACGCGGAACGTCTATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTG 36191 Query 44172 GATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 | || || ||| | || |||||| | |||||||| ||| |||||||||| | | || Sbjct 36190 GCTCCTTCTGCT-CTATCTTTTGGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTC 36132 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || || ||| |||| |||||||||||||| | || || |||||||| Sbjct 36131 TCGAACGAGCTAATTAGTCGTGATGAAGGTATGCACACGGACTTTGCTTG 36082 >seq2452 Length=30100 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| || || || || || |||| |||||||||||||| |||| |||||||| Sbjct 23674 ATGGCGTTACCTCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAACTGTCG 23615 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||| || | || | |||||||||||||| || || ||||| || || || Sbjct 23614 TGCCAGATGTACCAGCGCTCGGCCGACATGGGACTAGGTGTGCCATTTAATATTGCCAGC 23555 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGT--TACCAATTTAAAACCTGGTGAATTTG 41226 ||||| |||| ||| | || | || || || || | | |||||||| || | Sbjct 23554 TATGCGTTGCTAACGCGTTTGGTCGCGCAAGTGGTAGGA--CTGAAACCTGGCGA----G 23501 Query 41227 TTCA--CACGT--TAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 |||| || || | || || | ||||| || | |||||| ||||||| Sbjct 23500 TTCATCCATGTCATTGGTGACGCGCATATCTATTTGAATCACGTAGAGCC 23451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397434749393935