Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3976 100 4e-16 seq292 100 4e-16 >seq3976 Length=80323 Score = 100 bits (110), Expect = 4e-16 Identities = 306/460 (67%), Gaps = 11/460 (2%) Strand=Plus/Plus Query 129717 CCAGC-TTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 129775 ||||| ||| ||| || || || || |||||||| ||||| ||||| || | | | Sbjct 35785 CCAGCCTTGGAATACTCGCCCACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGCGAG 35844 Query 129776 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT--CCAATCT 129833 || | ||||| | || ||||| ||||| | | |||| ||||| ||| | Sbjct 35845 ATCATATCCATCCAGTCGAATGGATTCTTGGCATGATAAATCT-TGGCAACACCCAGTGA 35903 Query 129834 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATAC 129893 || | || ||||| || | ||| |||||||||||| | |||| | |||||||| | Sbjct 35904 GTAT-AGCAGACGGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGC 35962 Query 129894 CGATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCC 129952 | ||||| | ||| || |||| ||| | ||| | | |||||| |||||| || Sbjct 35963 CAATGAGCTCGACA-GGAAGCGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCA 36021 Query 129953 CGCACGATGGCGTGAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC 130011 || | || |||| | | ||| || || | | || || || | | | | Sbjct 36022 CGAATAATCTCGTGCACACGACTCGCTGGCAATT-TGTTAACCAGTTTCGAGTACA-TGA 36079 Query 130012 CACG-GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 130070 || ||||| ||| ||| | ||| || ||||| || || || |||||||||| | Sbjct 36080 GACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAA 36139 Query 130071 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 130130 |||| ||||| ||||| || ||||| | ||| || || | || || ||||||||||||| Sbjct 36140 GACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGA 36199 Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC 130170 | || || || || | || ||||| || ||||| || || Sbjct 36200 AAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGC 36239 >seq292 Length=16601 Score = 100 bits (110), Expect = 4e-16 Identities = 197/287 (69%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 179779 CCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGA 179838 || ||||||||||| || |||| |||| ||||||||| |||| || |||||||| Sbjct 5268 CCTTTAATGTGTGAGCCGTCGTGATCCTGATCCGTCATGGCAATAACGCGGCCATAGCGC 5209 Query 179839 AGCT-CGGAAA------CATCTTG--ATAATCCTTA-CCTTGTTGAAGACCCAAGATCTT 179888 || | | || | || || |||| || || || ||||||| | |||| | Sbjct 5208 AGTTTCTGACGTGCTTCCTTCGTGTCATAACGCTCGTCCATGC-GAAGACCAAGGATCGT 5150 Query 179889 CTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATT 179948 ||||| ||||| ||| |||||||||||| || ||||| || ||||| Sbjct 5149 GCAGAGATGTGCAAACTCGGCATTTTTACCGAGTTGCGCCACAGACGCATCGCGCACATT 5090 Query 179949 TTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACC 180008 | || ||||||||||| || |||||||| || ||||| || || || | ||||| Sbjct 5089 CAAAAGTTTGCCACGGAGAGGAAAGACACCGTACTGGTCACGCCCGACAACTGCAAGACC 5030 Query 180009 AGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCG 180055 || ||||| || | ||| || || ||||| || |||| ||| |||| Sbjct 5029 TGCCACTGCTAGTGCCTTTGCTGAGTCACCTTCGGTCAGGATAAGCG 4983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618401286559720