Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3976 123 3e-23 seq292 100 3e-16 seq41 89.7 6e-13 >seq3976 Length=80323 Score = 123 bits (136), Expect = 3e-23 Identities = 194/274 (71%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 ||||||||| ||| || ||||| | || ||| | || || | || | || ||| Sbjct 36356 TATATTAAGAATGCTGTAGAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGT 36297 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT--TCCTTTG 94801 | | |||||||| ||||||| | ||||||| ||| | || | || || | | Sbjct 36296 GTCAAGAAGAAAGCCAATTGGGCACTCAAGTGGTGTGACCCCC-GT-GTGTCATCGTACG 36239 Query 94802 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 94861 | || || || || || ||||| | || || || || ||||||||||| ||||||||| Sbjct 36238 CGGAACGTCTATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCT 36179 Query 94862 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 94921 |||| | |||||||||||| || ||||| ||||| ||||| ||||||| |||||||| | Sbjct 36178 CTATCTTTTGGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAA 36119 Query 94922 TCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | |||||| || || | ||| || ||||| Sbjct 36118 TTAGTCGTGATGAAGGTATGCACACGGACTTTGC 36085 >seq292 Length=16601 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 169322 ACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCA 169381 ||||| |||||||| |||||| | || ||||| ||||| ||||||||||| || ||| Sbjct 5109 ACAGACGCATCGCGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACCGTACTGGTCA 5050 Query 169382 CGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACG 169441 || || || || | ||||| || ||||| || | ||| || |||||||| ||||| | | Sbjct 5049 CGCCCGACAACTGCAAGACCTGCCACTGCTAGTGCCTTTGCTGAGTCACCTTCGGTCAGG 4990 Query 169442 ATGAGCGTACATT 169454 || |||| |||| Sbjct 4989 ATAAGCGAGCATT 4977 >seq41 Length=30697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/410 (66%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 || || |||||||| || | || || | ||||| |||||| |||| ||||| | || Sbjct 13129 TCGAAACGACCTGGGCGCAAGATAGCCTTGTCAAGAATATCAGCGCGGTTCGTACCAGCA 13188 Query 9587 ATGACAACAATACCT--GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | || || | |||| | | | || |||||||||||||| | | ||||||| Sbjct 13189 AGCACCACCACACCTTCGCTCGA--ATTGAAACCATCCATCTCAACTAGCAACTGGTTAA 13246 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--TGCTTTC-CC 9700 || | ||| || || ||||| || | | | | | || || | ||| | || Sbjct 13247 GCGTGTTTTCGCGCTCGTCATT-GCCGCCCGAGAAGTTACCCTTGCTTCGTGCACGCGCC 13305 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| ||||| ||||| || || |||| | ||||| | | ||| Sbjct 13306 ACTGCATCGATTTCATCGATGAACACGATACACGGAGCATTTGCACGAGCCTCCTTAAAC 13365 Query 9761 AGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||| || ||||| || || ||||| || || |||||||| | || | | | | Sbjct 13366 AGATCACG--CACGCGTGACGGACCCACGCCTACGAACATCTCGATGAAATCCGACCCCG 13423 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 || | ||| || ||| ||| |||||| || |||| || | || ||||||| Sbjct 13424 AAATGCTAAAGAATGGCACACTAGCTTCACCAGCTGTGGCCTTCGCCAACAGCGTCTTAC 13483 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||||||| ||| ||| | || || || || ||||||||||| ||| Sbjct 13484 CCGTACCAGGCGGACCAACAAGCAGCGCCCCCTTAGGAATCTTGGCACCA 13533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583228815435880