Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4330 185 1e-41 seq3976 181 1e-40 >seq4330 Length=10061 Score = 185 bits (204), Expect = 1e-41 Identities = 886/1386 (64%), Gaps = 57/1386 (4%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||||| ||||| |||||||| || || || |||||||| || | || || Sbjct 1720 GAGACGTACGAGTTGATGTCTCAGAAGTTTTTTACTCATGCGACGCCAACGTTGTTTAAT 1779 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || ||| || |||| ||||| || | |||||| ||||||| Sbjct 1780 GCTGGAACTCCTCGCCCCCAACTGTCCTCGTGTTTTTTACTAGCTATGCAGGATGATTCG 1839 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||| || || || || || | ||| | || ||| ||| ||||| ||| | || || Sbjct 1840 ATTGAAGGTATTTATGACACATTGAAGCAATGTGCGTGCATTTCCAAATGGGCTGGTGGG 1899 Query 19346 ATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACA-CGA-ATCAATGGGACGAAC 19402 || || || ||| | || || || | | | ||| | | || ||| || || Sbjct 1900 ATTGGCATTAGTATGCAC-AACATACGAGCCACTA--ACAGCTATATTCGTGGCACTAAT 1956 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 || | |||| ||| | || ||| | || || || ||| |||||||| | ||||| Sbjct 1957 GGTTCCTCTAACGGGATCATTCCCATGTTACGGGTGTTTAACGACACGGCCCGATACGTG 2016 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 |||| || || ||||||||||| || || || || || ||| | ||||| ||||| || Sbjct 2017 GACCAAGGTGGAGGCAAACGCAAAGGATCCTTTGCTATATACTTGGAGCCGTGGCATGCC 2076 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 ||||| | || || || || ||||| ||||| ||| | || | || || Sbjct 2077 GACGTGTTTGAGTTTCTAGACCTGCGTAAAAACCACGGTAATGAATTGCACCGAGCGCGT 2136 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 ||| | ||| || | |||||||| || || || ||| | | || || |||| Sbjct 2137 GACTTATTCTACGCTCTATGGATTCCTGATCTGTTTATGAA-ACGGGTG-GAAGCT---- 2190 Query 19643 GAATGGCACCTGATGT-------GCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695 ||||||| || || | ||| ||||| |||| || ||| || || Sbjct 2191 -AATGGCAAGTGGAGTTTATTCTGTCCGAACGAAGCTCCTGCTCTCTACGAGTGCTGGGG 2249 Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCG-GTTC--AAGA-AGG 19751 || | |||| | | | || | |||| | |||| || | || |||| | Sbjct 2250 AGACGAGTTCGAGACGCTTTATGAAAAGTACGAAAAGGAGGGACGCGCTCGCAAGACAAT 2309 Query 19752 TGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGC-CAGGTCGAGACCGGCACA 19810 | | || | | | | ||| | || | | | | || ||| | ||||| ||| Sbjct 2310 TAATGCG----CAGCAGCTATGGTTCAGCATTTT-AGATGCGCAGATTGAGACGGGCGTG 2364 Query 19811 CCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCG 19870 || | ||| || |||||||| || ||| ||||| || ||| |||| | ||| || Sbjct 2365 CCATTTATGCTCTTTAAGGACGCAGCCAACCGTAAGTCCAACCAGCAGAATCTTGGCACG 2424 Query 19871 ATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCC 19930 ||| || ||| |||| ||| | |||||| | | |||||| ||| ||| Sbjct 2425 ATCCGATCCAGTAACTTGTGCTGTGAGGTAATGGAGTATACGTCGCCGGATGAGGTGGCC 2484 Query 19931 GTGTGTAATCTGGCGTCCCTGTGCCTG--CCGACTTTCGTCAAGGCCTCCTCCTTCGACT 19988 ||||| || ||||||| |||| || || | || || ||| | |||||||| Sbjct 2485 GTGTGCAACTTGGCGTC--TGTGGCTTTACCTAAGTTTGTGGAGGACGGTGTCTTCGACT 2542 Query 19989 TTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATC 20048 || |||| || ||||| ||| ||||| ||||| || || || || || Sbjct 2543 ACAAGAAGCTGTATGATGTGACGAAGGTGGTCACCCGTAACCTTAACAAGGTTATTGACG 2602 Query 20049 GGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGA 20108 |||| |||||| | | ||| || ||||| || ||||||||||| || | | | Sbjct 2603 TCAACTACTACCCGGTTGCAGAGGCTCGAAAGTCCAACATGCGCCACCGCCCTGTGGGCA 2662 Query 20109 TCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCT-CATTCGA---CGAT 20164 | || || ||||| |||||||| | |||||| | | | || | | ||||| ||| Sbjct 2663 TTGGTGTTCAGGGTCTGGCCGATGCTTTCATTCTCAT-GAACTATGCGTTCGAAAGCGAG 2721 Query 20165 CCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTG 20224 | |||| || || || |||||| || || ||| || | || | || | | | Sbjct 2722 C---AGGCTCGTGAACTGAACAAGAATATTTTTGAGACCATCTATTATGCTTCGATGGAG 2778 Query 20225 GAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCG 20284 ||| || | |||||||| |||||||||||||| || |||| || || || Sbjct 2779 ACATCCATGGAGATTGCCAAAGAACTGGGCCCGTACGAGACATTTCAGGGCTCCCCGGCC 2838 Query 20285 TCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAAT----GAGTTT----- 20335 | |||||||| ||||| ||||||||||| ||||| | | ||| Sbjct 2839 AGCAAGGGTATCTTCCAGTTCGACATGTGGGGTGTCACCCCGTCCTCTGGTCTTTGGGAC 2898 Query 20336 TGGAGCGCCCTCAAGGTTGA---GATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTC 20392 |||| |||| | |||| | ||| ||| ||||| | |||||||| ||||| || Sbjct 2899 TGGACCGCCTTGAAGGAGAACGTGATTAAG---CACGGCATCCGCAACTCTTTGCTAGTG 2955 Query 20393 GCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCG 20452 || || ||||| || || ||||| || |||||| | || ||||||||| | |||||||| Sbjct 2956 GCTCCTATGCCTACTGCTTCGACTGCTCAGATCCTTGGTAACAACGAGTCCATCGAGCCG 3015 Query 20453 TACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAG 20512 |||||| | ||||| ||| || ||| || || ||||||||| || || |||||| Sbjct 3016 TACACGTCGAACATGTACAACCGACGTGTGCTTGCTGGTGAGTTCACGATCGTGAACAAG 3075 Query 20513 CACCTG 20518 ||||| Sbjct 3076 TACCTG 3081 Score = 131 bits (144), Expect = 2e-25 Identities = 452/696 (65%), Gaps = 27/696 (4%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| ||||| | |||||||||||||| | ||||||||| || | |||||| || ||||| Sbjct 3033 GTACATGTTCGACGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGA 2974 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || || ||||| || || || || | ||| || || | || ||| || ||| || Sbjct 2973 AGCAGTAGGCATAGGAGCCACTAGCAAAGAGTTGCGGATGCCGTGC---TTAATCACGTT 2917 Query 78654 CT--TT--AGGCCGTCC-----CAAAATTCATTCGCCGCGATC---CCCCACATGTCCGG 78701 || || |||| |||| |||| || | || | | ||||||||||| Sbjct 2916 CTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGAGGACGGGGTGACACCCCACATGTCGAA 2857 Query 78702 TTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTT 78761 || | |||||||| | ||||| || |||| || |||||||| | ||| || || Sbjct 2856 CTGGAAGATACCCTTGCTGGCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTT 2797 Query 78762 GGCGAGTTC---GCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTT 78818 ||| | || | ||| ||| || | || | || | | ||| || || ||| Sbjct 2796 GGCAATCTCCATGGATGTCTC---CATCGAAGCATAATAGATGGTCTCAAAAATATTCTT 2740 Query 78819 GTTGAGCTCGCGCGCCTTGGTCTC-GTCGAACGAAAGGCCGAGCATCATGAAGACATCGG 78877 ||| || || || ||| || || | ||||||| | | | | ||||| |||||| Sbjct 2739 GTTCAGTTCACGAGCC-TGCTCGCTTTCGAACGCATAGTTCATGAGAATGAAAGCATCGG 2681 Query 78878 CCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCT 78937 |||| ||||| || || || | | || ||||||||||||||| |||||| ||| | Sbjct 2680 CCAGACCCTGAACACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTG 2621 Query 78938 CGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCA 78997 | |||||| |||| || || || ||| |||||||| ||||| ||| |||| Sbjct 2620 CAACCGGGTAGTAGTTGACGTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTCA 2561 Query 78998 CCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAAAGTCGGT--AGGCACAG 79055 | || |||| || | | || || | | | | || | ||| || |||| Sbjct 2560 CATCATACAGCTTCTTGTAGTCGAAGACACCGTCCTCCACAAACTTAGGTAAAGCCACA- 2502 Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115 || |||| ||||||||||||| ||| ||||| | | ||| || | || ||| Sbjct 2501 -GACGCCAAGTTGCACACGGCCACCTCATCCGGCGACGTATACTCCATTACCTCACAGCA 2443 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 ||| ||| || ||| ||||| | |||| ||||||| ||| ||| ||||| Sbjct 2442 CAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTC 2383 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||| || ||| | ||| || ||||||| ||| Sbjct 2382 CTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTG 2347 Score = 122 bits (134), Expect = 1e-22 Identities = 269/399 (67%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || ||||| |||||| || ||||| || | | |||||| ||||||||||||| || Sbjct 2114 CCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTAT 2055 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 || || || || || ||||| ||||| || || |||| ||||| |||||||||| ||| Sbjct 2054 ATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTA 1995 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGT--CCCGTTGATTCGTG 79621 || || || | |||||| | ||| |||| | | || || || | || || || Sbjct 1994 AACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTG 1935 Query 79622 TACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATG 79680 | | || || ||||| | ||| || || || || || | ||| ||||| ||| Sbjct 1934 T--TAGTGGCTCGTATGTT-GTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATG 1878 Query 79681 TGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACC 79740 ||| || | ||| | || || || || || || ||||| || |||| |||||| | Sbjct 1877 CACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGT 1818 Query 79741 AGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 | || || |||| || ||| || || || || || | || |||||||| Sbjct 1817 AAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCA 1758 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 || || || ||||| || ||||| |||||||||||| Sbjct 1757 TGAGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCC 1719 >seq3976 Length=80323 Score = 181 bits (200), Expect = 1e-40 Identities = 553/841 (66%), Gaps = 13/841 (2%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | ||| |||||| | | ||| ||| | ||| | | || | Sbjct 36625 TGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGACTTGGTGCATGATC 36566 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||||||||| | | || | || | || | ||||| || ||| || || |||| Sbjct 36565 TCAAGGATTGGAAAACACTTACGGACAATGAACGTCATTTTATTAAGCATGTGCTTGCCT 36506 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 | || || || |||||||| ||||||| || ||| | | |||||||||| ||| || | Sbjct 36505 TTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGAACTTTAGCAATGAAG 36446 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 | || | | || || || | || |||| | ||| | | | | |||| ||| ||| Sbjct 36445 TGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAAATTGCT-ATCGAGAATATTCAC 36387 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 || ||| || || || | || |||| | | ||| || | | |||||| | | | Sbjct 36386 TCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGCTGTAGAGAAAGATCAT 36327 Query 59892 CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951 || | ||||| || || ||| ||| || || | ||||| | ||||| | || Sbjct 36326 CTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGCCAATTGGGCACTCAAG 36267 Query 59952 TGGA-TGAGTCCTG-GAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 ||| ||| || | | | |||| | || ||||||| | || ||||| | || ||| Sbjct 36266 TGGTGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGCGTTTGCTTCGGTAGAA 36207 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 || || |||||||||||||| ||||| |||| || |||||||| || ||||| || ||| Sbjct 36206 GGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAAGAAACGTGGTCTGATG 36147 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128 || || || || ||||| |||||||| ||| || || || || | || ||| ||| Sbjct 36146 CCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGGTATGCACACGGACTTT 36087 Query 60129 GCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATATTCACAAGAT 60187 || || | | | || || | || | | |||| || | | | | ||| |||| Sbjct 36086 GC-TTGTCTCATGTACTCGAAACTGGTTAACAAATTGCCAGCGAGTCGTGTGCACGAGAT 36028 Query 60188 TGTTCAGTGGGCTTGTGA-AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAAC 60246 | ||| ||| ||||| | | ||| |||||| | || ||||||| | | | Sbjct 36027 TATTC-GTGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCGCTTCCTGTCGAGC 35969 Query 60247 TCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCA 60306 |||| || ||| || | | | ||| ||||||||| |||| || || ||||| || Sbjct 35968 TCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTCTGC 35909 Query 60307 TGGCCCAGTTTGGAGAAGGACCA--ATTTACGGCGTGAATAACCCTTTCGACTGGATGGA 60364 | | | || | | ||| ||||| | || || || |||||||||||||| Sbjct 35908 TATACTCACTGGGTGTTG--CCAAGATTTATCATGCCAAGAATCCATTCGACTGGATGGA 35851 Query 60365 GACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAA 60424 | |||||| | |||| ||||||||||| || ||||| || || || || ||||| || Sbjct 35850 TATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCGAGTATTCCAA 35791 Query 60425 G 60425 | Sbjct 35790 G 35790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548494720271280