Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4330 201 1e-46 seq1055 136 5e-27 seq3976 113 5e-20 seq292 109 6e-19 seq452 96.9 4e-15 >seq4330 Length=10061 Score = 201 bits (222), Expect = 1e-46 Identities = 654/1005 (65%), Gaps = 23/1005 (2%) Strand=Plus/Minus Query 80041 CGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTG 80100 |||| || ||||| |||||||| || ||||| ||||| |||| | |||||| || || Sbjct 3377 CGCATGTAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGGTG 3318 Query 80101 AGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 || || | || |||| | ||| ||||| || |||||| ||| || ||| || Sbjct 3317 AGTTTACTGATCGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAATGTAA 3258 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGA 80220 || ||||| || |||| || || | | || || || |||||||| ||||| Sbjct 3257 GCACCACGGTCAGCCGACAGATCTAACACCGATTTCTGCTTGATTTCCCACACTGTTTTG 3198 Query 80221 TACACCTTACGAAGCTCCTCTGGAATG---TCCAGATTTTGCACACTGCCACCGTCCTTT 80277 ||| || | | || |||||| | || ||||||||| |||| ||| || Sbjct 3197 TACTTCTCTTTGACATGGTCCGGAATGGTCTTCACCTTTTGCACAGAACCACGGTCGTTC 3138 Query 80278 ACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337 | || || || | || | |||||||| | | || | | ||| ||||||| ||| Sbjct 3137 AGTATCTGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTCTTTCATCAGG 3078 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 | |||||| | || ||||| || || || || || |||| ||| | ||| Sbjct 3077 TACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGACGTG 3018 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 || ||||| | | ||||||||| || ||||||||||| || || || ||||| || Sbjct 3017 TACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGA 2958 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAA 80517 | || | || || || || | ||||||||| | | | ||| ||| | | ||| Sbjct 2957 GCCACTAGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAG 2898 Query 80518 AAATCAACCCCA----ACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGAC 80571 || ||| ||| ||||| ||||||||||| ||| ||||| |||| Sbjct 2897 TCCCAAAGACCAGAGGACGGGGTGACACCCCACATGTCGAACTGGAAGATACCCTTGCTG 2838 Query 80572 GCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGA---C 80628 ||||| || ||| || ||||||||||||||| ||||| | ||| || | Sbjct 2837 GCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGGATGTC 2778 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688 ||||| | || | ||| ||| |||||| | |||||||| | || ||||| Sbjct 2777 TCCATC---GAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGC 2721 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 | ||||||| || ||| | ||||| | || ||||| |||||||| || ||| Sbjct 2720 TCGCTTTCGAACGCATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATG 2661 Query 80749 GCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATT 80807 | | |||||||||||| |||| || | ||| ||||| | || ||||| |||| Sbjct 2660 CCCACAGGGCGGTGGCGCATGTTGGA-CTTTCGAGCCTCTGCAACCGGGTAGTAGTTGAC 2602 Query 80808 ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAA 80867 || || || ||| ||||| || || || ||| || ||||||| || |||| | Sbjct 2601 GTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTA 2542 Query 80868 GTCGAATTGGTTCC--CCTTCACAAA-TGCCGGAAGGCTCAGGGACGCCAGATTGCACAC 80924 |||||| | || ||| |||||| | | || || || ||||||| |||||||| Sbjct 2541 GTCGAA--GACACCGTCCTCCACAAACTTAGGTAAAGC-CACAGACGCCAAGTTGCACAC 2485 Query 80925 GGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAAT 80984 ||||||||| || | ||| |||| | | || |||||| ||| || || Sbjct 2484 GGCCACCTCATCCGGCGACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGAT 2425 Query 80985 TGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 || || || || | |||||| ||||| |||| |||||||| Sbjct 2424 CGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTT 2380 >seq1055 Length=24595 Score = 136 bits (150), Expect = 5e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| | || |||||||| |||||| | || || ||| | Sbjct 13689 ATCATGCAGATCTTTGTAAAGACTTTGACAGGCAAGACCATTACTTTGGACGTGGAGCCG 13630 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || |||||| ||| | ||| ||||| ||||||||||| || ||||| || ||| Sbjct 13629 TCCGACTGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATTCCACCTGAC 13570 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || |||||||| ||||| || || || | |||||| || | ||||| Sbjct 13569 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGTCGTACGCTGTCGGACTAC 13510 Query 27583 AATGTCCAAAAGG 27595 ||| | || |||| Sbjct 13509 AATATTCAGAAGG 13497 >seq3976 Length=80323 Score = 113 bits (124), Expect = 5e-20 Identities = 361/553 (65%), Gaps = 9/553 (2%) Strand=Plus/Minus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| | | |||||||||||| || |||||||| | ||| ||| | || | | Sbjct 36634 TGTGGCAAATGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGACTTGG 36575 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | ||||||| || ||| ||| || | | ||| |||| || || || ||| Sbjct 36574 TGCATGATCTCAAGGATTGGAAAACACTTA-CGGACAATGAACGTCATTTTATTAAGCAT 36516 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 || || || || || ||| | ||||| || |||||| ||||||| | | | | || ||| Sbjct 36515 GTGCTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGAACTTT 36456 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATT--TAACG 64555 | || || || || | || || || || | || || | | ||| ||| || || Sbjct 36455 AGCAATGAAGTGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAA--ATTGCTATCG 36398 Query 64556 AAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCG 64615 | | |||||| ||| ||||| || | ||||| | | | || | || |||| | Sbjct 36397 AGAATATTCACTCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGCTGTAG 36338 Query 64616 AGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAAT 64675 |||| ||| || | | ||||| || || | || ||| | || || || | | Sbjct 36337 AGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGCCAATT 36278 Query 64676 GGGCCATCCGGTGGA-TGAATC--GTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTG 64732 |||| || |||| ||| | ||| ||| |||| | | ||||| || |||| Sbjct 36277 GGGCACTCAAGTGGTGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGCGTTTG 36218 Query 64733 CCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGC 64792 | | || ||||| |||||||| ||||| || ||||| ||||| || ||||| || || | Sbjct 36217 CTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAAGAAAC 36158 Query 64793 GGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCC 64852 | || |||||||| ||||| || ||||||||||| || ||| || || || | | Sbjct 36157 GTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGGTATGC 36098 Query 64853 ACCAAGAATTTGC 64865 || || ||||| Sbjct 36097 ACACGGACTTTGC 36085 >seq292 Length=16601 Score = 109 bits (120), Expect = 6e-19 Identities = 186/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || ||||| ||| ||| ||||| |||||| | | ||||||| | ||| || ||| | Sbjct 5777 GATGGCCTTAAGATTTCGCAGCGTAAGGTGCTGTTCGCCTGCATGAAGCGCAAGCTGACT 5836 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAG--AGCAAACGGCCTATCACC 32101 || || | ||||| ||||| ||| |||| ||| |||| |||| || || ||||| | Sbjct 5837 AGCGAGGTAAAGGTCGCGCAACTGGCGGGTTACT--GCAGTGAGCACACAGCTTATCATC 5894 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 | || || || || | || || ||||| ||| | || ||||||||||| ||| | | Sbjct 5895 ATGGTGAAGCTTCATTACATTCTACAATTGTTAACATGGCCCAGAACTTTGTTGGTTCTA 5954 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||||| | || | ||||| || || ||||| || ||| | || ||||||| Sbjct 5955 ACAACCTTCCACTGCTGTATCCATCCGGCCAATTTGGAACTCGGTTGCAAGGAGGCAAGG 6014 Query 32222 ATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||| || || | || || ||||| || Sbjct 6015 ATGCCGCTAGTCCTCGATATATCTTTAC 6042 >seq452 Length=4125 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||| ||||| || |||||||||||||| || ||||||| ||| Sbjct 734 GGAATCCCCCCGGACCAGCAACGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGT 793 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || |||| ||||| || | |||||||| || || | || | || | |||||||| Sbjct 794 ACGTTAGCGGACTACAACATTCAAAAGGAGTCAACCTTGCACTTGGTGCTACGTCTTCGT 853 Query 27628 GGTGGA 27633 |||||| Sbjct 854 GGTGGA 859 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| ||||| |||||||| ||||| || || || || || | Sbjct 551 AATGCAGATTTTTGTCAAGACCCTTACGGGCAAGACCATTACGCTCGAAGTGGAATCGGC 610 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || || |||| | | | ||| ||||||||||||||||| || Sbjct 611 GGACAGTATTGACACTGTCAAGCAGAAAATTCAGGACAAGGAAGG 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570279125603440