Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2452 125 6e-24 >seq2452 Length=30100 Score = 125 bits (138), Expect = 6e-24 Identities = 432/662 (65%), Gaps = 15/662 (2%) Strand=Plus/Plus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 || || || |||| || || |||| || ||||| || | | |||| ||||| || Sbjct 23448 AGTGGCTCTACGTGATTCAAATAGATATGCGCGTCACCAATGACATGGATGAACTCGCCA 23507 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 |||| || || || || || | || ||| || | | |||||||| || ||| Sbjct 23508 GGTTTCAGTCCTACCACTTGCGCGACCAAACGCGTTAGCAACGCATAGCTGGCAATATTA 23567 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 30055 || || || || || |||||||| |||| | |||||| | ||| ||||| || || || Sbjct 23568 AATGGCACACCTAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCA 23627 Query 30056 TCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 || ||||||||||||||| | |||||||||||| | ||||| | || Sbjct 23628 TCCGCCACGTAAAACTGACAAAACATGTGGCACGGAGGTAACGCCATTTCATTTAGATCA 23687 Query 30116 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30175 || ||||| || ||| | || || | ||| ||||| |||| | ||| | Sbjct 23688 GCCGGATTCCAAGCTGACAGCACAATTCGGCGGTC-ACTGGG--GTTCGTACGGAGCT-T 23743 Query 30176 ACGG----CGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30231 | || | | ||||| ||||| || || ||||| || ||||||||| Sbjct 23744 ATGGATAACATCGGCAAGCTGGTCCACGCCTTGGCCTCTATAGTCGGCGTGCATGTCCGT 23803 Query 30232 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30291 ||||| || || ||||| | ||| || || ||||| |||||||| || |||||| | || Sbjct 23804 GTACTTGGCACCAAAATGACGCCATTGAAAACCGTATACCGGTCCAAGATCTCCCACCTC 23863 Query 30292 CCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | ||| | | ||||| || ||||||| | || | || || ||| |||||||||| Sbjct 23864 AC-GTGATTGCAGCCCTCTACTGTCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGG 23922 Query 30351 TTACCCCCTTCT-CAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30409 | ||||| | || ||| | | |||||| || || | ||||||||||| | Sbjct 23923 AAATATTCTTCTGCTGA-AGCGTGTGAGCATTTGTGTCACCACTAATGAACCACAGCAAC 23981 Query 30410 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA--GGGGAAACTGTC-CC 30466 || || | || | |||||| || |||| ||||| || | ||| | || || || Sbjct 23982 TCTTCGGCCACACCTCGCCAAAACACTTTCTTCGTCGTCAGCAACGGGAAGACATTCTCC 24041 Query 30467 TTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCT 30526 | || | | || ||| | |||||||| ||||| || ||||| || | |||| Sbjct 24042 CTCAGACTAAATCTCATCTGCGCTCCAAACACAGACAACGTCCCGGTGCCTGTTCGGTCT 24101 Query 30527 CC 30528 || Sbjct 24102 CC 24103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406288675979604