Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2452 143 2e-29 >seq2452 Length=30100 Score = 143 bits (158), Expect = 2e-29 Identities = 385/587 (66%), Gaps = 14/587 (2%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||| | ||| |||| ||||||||||| || || | ||| | | ||| ||||| Sbjct 23452 GCTCTACGTGATTCAAATAGATATGCGCGTCACCAATGACATGGATGAACTCGCCAGGTT 23511 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || || || || || |||| || ||| |||| || || || ||||| || || | Sbjct 23512 TCAGTCCTACCACTTGCGCGACCAAACGCGTTAGCAACGCATAGCTGGCAATATTAAATG 23571 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||| |||| |||||||| |||| || || || | |||||| ||||| || |||| || Sbjct 23572 GCACACCTAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCATCCG 23631 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 | ||||| || || || | |||||||||| || | |||||| | ||||| || Sbjct 23632 CCACGTAAAACTGACAAAACATGTGGCACGGAGGTAACGCCATTTCATTTAGATCAGCCG 23691 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | ||||| || ||| ||| || | | |||| |||||| | | | ||| | Sbjct 23692 GATTCCAAGCTGACAGCACAATTCGGCGGTCACTGGGGTTCGTACGGAGCTTATGGATAA 23751 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 | | | || ||||||||| | || || || |||||| || | | || |||| Sbjct 23752 CAT-CGGCAAGCTGGTCCACGCCTTGGCCTCTATAGTCGGCGTGCATGTCCGTGTACTTG 23810 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || ||||| || | ||| || || ||||| ||||| || | || ||| |||| || ||| Sbjct 23811 GCACCAAAATGACGCCATTGAAAACCGTATACCGGTCCAAGATCTCCCACCTCACGTGAT 23870 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAG------ATCTTC 7018 | | ||| | |||||| | || || || || | |||||||| || ||| Sbjct 23871 TGCAGCCCTCTACTGTCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGGAAATATTC 23930 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCC 7078 | | | || | | | || |||| | || || | ||||||||||| ||| Sbjct 23931 TTCTGCTGAAGCGTGTGAGCATTTGTGT------CACCACTAATGAACCACAGCAACTCT 23984 Query 7079 TCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 ||| |||| || ||| |||| ||||||||||||| ||| || Sbjct 23985 TCGGCCACACCTCGCCAAAACACTTTCTTCGTCGTCAGCAACGGGAA 24031 Score = 143 bits (158), Expect = 2e-29 Identities = 385/587 (66%), Gaps = 14/587 (2%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || ||| ||||||||||||| |||| ||| || |||| ||| ||| |||||||| Sbjct 24031 TTCCCGTTGCTGACGACGAAGAAAGTGTTTTGGCGAGGTGTGGCCGAAGAGTTGCTGTGG 23972 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT------C 34333 ||| | || || | |||| || | | | || | | | ||| || | Sbjct 23971 TTCATTAGTGGTG------ACACAAATGCTCACACGCTTCAGCAGAAGAATATTTCCATC 23918 Query 34334 TGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAG 34393 ||||||| | || || || || | |||||| | ||| | | ||| || |||| | Sbjct 23917 TGGGACGGCAATGGATCGCGCGAGTACTTGGACAGTAGAGGGCTGCAATCACGTGAGGTG 23858 Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || || | || ||||| ||||| || || ||| | || ||||| || |||| || Sbjct 23857 GGAGATCTTGGACCGGTATACGGTTTTCAATGGCGTCATTTTGGTGCCAAGTACACGGAC 23798 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTT 34512 | | || |||||| || || || | ||||||||| || | | || ||| | | | Sbjct 23797 ATGCACGCCGACTATAGAGGCCAAGGCGTGGACCAGCTTGCCG-ATGTTATCCATAAGCT 23739 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 |||||| |||| | | || ||| ||| || ||||| ||| ||||| Sbjct 23738 CCGTACGAACCCCAGTGACCGCCGAATTGTGCTGTCAGCTTGGAATCCGGCTGATCTAAA 23679 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632 | |||||| | || |||||||||| | || || || ||||| ||| |||| || || Sbjct 23678 TGAAATGGCGTTACCTCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAACT 23619 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||| |||||| | || || || |||| |||||||| |||| ||||| || || ||||| Sbjct 23618 GTCGTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTAGGTGTGCCATTTAATATTGC 23559 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 || || || |||| ||| || |||| || || || || || ||||| ||| | Sbjct 23558 CAGCTATGCGTTGCTAACGCGTTTGGTCGCGCAAGTGGTAGGACTGAAACCTGGCGAGTT 23499 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 | ||| | || || ||||||||||| |||| ||| | |||| Sbjct 23498 CATCCATGTCATTGGTGACGCGCATATCTATTTGAATCACGTAGAGC 23452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448237818410640