Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1488 199 9e-46 seq1055 132 1e-25 seq1078 114 3e-20 seq4098 105 2e-17 seq1071 84.2 5e-11 >seq1488 Length=3552 Score = 199 bits (220), Expect = 9e-46 Identities = 217/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| |||||||||| ||||| | | |||| ||| | Sbjct 2112 AACTTTATATTTAATTTTTAGTGCTTTTGCTGGTATTATCGGTACAACACTTTCGATGTT 2171 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||| | || ||| |||||| || | || ||| ||| | || Sbjct 2172 AATTAGAATTGAATTATCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATA 2231 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| | |||| || || || ||| ||||| |||| ||||| |||||||| | | | Sbjct 2232 TAATGTTGTAGTTACTGCTCACGCTTTTATTATGGTTTTTTTTTTAGTTATGCCTGCTTT 2291 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || || |||||||||||||| ||||||||||||||||| Sbjct 2292 AATTGGAGGTTTTGGTAATTGGTTTGTACCTTTAATGATTGGAGCTCCTGATATGGCTTT 2351 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 2352 TCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 2399 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| || ||||| || |||||||||||||| | | ||||| || || ||||| Sbjct 2796 TTCAGGATGGCCGAAAAACCAAAATAAATGTTGATATAATACGGGATCACCACCACCTGA 2737 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||| ||| |||| |||||| ||||||| ||||||||| |||| Sbjct 2736 TGGGTCATAAAACGAAGTATTTAAATTTCGATCAGTTAATAACA 2693 >seq1055 Length=24595 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || || | |||||| || | || || | || ||||| |||||||| ||||| ||||| Sbjct 13499 TTCTGAATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATC 13558 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||||||||||||||| ||||| || ||||| ||| || Sbjct 13559 AGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 13618 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 ||| ||| || | |||||||| || || || |||||||| |||||||| |||| || Sbjct 13619 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAAAG 13678 Query 225706 ACTTGCAT 225713 | ||||| Sbjct 13679 ATCTGCAT 13686 >seq1078 Length=24344 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 20085 AGCCTATTATCTTTAGCTGATTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 20144 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| |||||||||||||| | Sbjct 20145 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 20203 Query 6865 GTAAT 6869 | ||| Sbjct 20204 GCAAT 20208 Score = 109 bits (120), Expect = 1e-18 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 20772 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 20713 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| || || | ||||| ||| | || Sbjct 20712 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATCATACTTTTCAGGCGGAGTGCTT 20653 Query 7850 TACGCGTTAGCTTAATTA-ATATAAAAA 7876 ||||||||||| |||| || |||||| Sbjct 20652 AACGCGTTAGCT--ATTATATCTAAAAA 20627 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 16878 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 16937 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 16938 GTAACATGATGTATAGGGTCTGACAC 16963 >seq4098 Length=10659 Score = 105 bits (116), Expect = 2e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||||||||| || || ||||| || || ||||| |||||||| ||||| Sbjct 383 AAAATTTGTCCATCAGTAATTGAAATTACATTAGTTGGTATATATGCAGAAACGTCACCA 442 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || ||||| ||||||| || |||||||||| ||| |||| Sbjct 443 GCTTGGGTTTCAATAATCGGTAAAGCTGTTAAAGAACCACCACCAATTTTTCTATT 498 >seq1071 Length=12616 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638 ||||| ||| ||||| ||| | |||||||| | | | || || |||| || ||| Sbjct 495 CATGCTTTTTTTATGTTTTAAATCA--GTTATGCCTGCTTTAATTGGTAGTTTTGGTAAT 552 Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || || ||||||||||||||||| ||||||||| ||||||||||| Sbjct 553 TGGTTTGTTCCTTTAATGATTGGAGCTCCTGATTTGGCTTTTCCA 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192464169684578