Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3976 224 1e-53 seq4330 120 4e-22 >seq3976 Length=80323 Score = 224 bits (248), Expect = 1e-53 Identities = 591/891 (66%), Gaps = 21/891 (2%) Strand=Plus/Plus Query 47855 ATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 47914 ||| || |||||||||||||||||||| || || ||||||| | || || | ||||| Sbjct 35796 ATACTCGCCCACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGCGAGATCATATCCAT 35855 Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCT 47974 | || |||||||| |||| |||||| || || || | | | | ||| | Sbjct 35856 CCAGTCGAATGGATTCTTGGCATGATAAATCTTGGCAACACCCAGTGAGTATAGCAGACG 35915 Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 || || ||||| || || || ||| | | | | ||||| || || || | || Sbjct 35916 GTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAGCTCGAC 35975 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC--ACTATTATCGAT 48092 || || | || | |||||| || || || || |||||||| | || | ||| | Sbjct 35976 AGGAAGCGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCACGAATAATCTCG-T 36034 Query 48093 GTTACCGTTTC-CT--CACTTGGTGGATACAACAAATGTTTAA-ACATTAAACATGCAAA 48148 | || || || || || || ||| | | | | |||| | ||| ||||| Sbjct 36035 GCACACGACTCGCTGGCAATTTGTT-----AACCAGTTTCGAGTACATGAGACAAGCAAA 36089 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 || || | ||||||||| | |||||||| ||||| || || | ||||| ||||| Sbjct 36090 GTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCAT 36149 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 || |||||||| ||||||||||| || | ||| || ||||| ||||| |||||||| Sbjct 36150 CAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTC 36209 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTT- 48327 ||| | ||||| || || | || |||| | | | | |||| | Sbjct 36210 TACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACACGGGGGTCACACCACTT 36269 Query 48328 --GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||||||| || |||||||| ||||| || || || || |||||| | |||| Sbjct 36270 GAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATG 36329 Query 48386 GtttttttC-ATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444 | ||| || | || |||| || || ||||| || | || ||| | || |||| Sbjct 36330 ATCTTTCTCTACAGCATTCTT-AATATATGTATCAATAAGCAGTGAATAGACCTCCGAGT 36388 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 ||||||| || || || || ||||| |||||||| || | ||||| | | || || | Sbjct 36389 GAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTT 36448 Query 48505 CCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 | | | ||| ||||| || | ||||||||| || || |||||||| || |||||||| Sbjct 36449 CATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAA 36506 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | ||||| |||||||||| ||| ||| || ||| | ||||| || |||| Sbjct 36507 GGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAG 36566 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 ||| | | || | ||||| |||||||| || || ||||| ||||| || ||||| Sbjct 36567 ATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTCTTGTACAT 36626 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 | ||| | || | | || || || |||| ||||| | ||| || || Sbjct 36627 TTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAACGATTCGGGTT 36677 >seq4330 Length=10061 Score = 120 bits (132), Expect = 4e-22 Identities = 779/1241 (63%), Gaps = 26/1241 (2%) Strand=Plus/Minus Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480 ||||| || || || ||||| ||||| || || || | || | || || |||| | Sbjct 2765 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2706 Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 || | | ||||| || ||||| || | |||||||| ||||| || | ||| | || Sbjct 2705 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2646 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 | | | ||||| || ||| |||| || || || || || | ||| |||| || || Sbjct 2645 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2586 Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT 77660 || || | || || || ||| || | || || | || || || || Sbjct 2585 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2526 Query 77661 ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG 77720 |||||| | ||||| | ||| || | || || || || ||||||| | Sbjct 2525 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2466 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 | ||| | |||| ||| || | ||||| || ||| ||||| ||||| || ||| Sbjct 2465 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2406 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 ||| ||| ||| || ||||||| | || ||||| || || || |||||||| Sbjct 2405 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2346 Query 77841 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGT-ATCGCCTCTC 77899 | || | ||| ||| | || || | | || | ||| | ||| || | Sbjct 2345 GCATCTAAAATGCTGAACCATAG--CTGCTGCGCAT-TAATTGTCTTGCGAGCGCGTCCC 2289 Query 77900 TC--TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 || |||| || | ||| ||| || || || |||||||| || | | || Sbjct 2288 TCCTTTTCGTACTTTTCATAAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAGCA 2229 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCAT---CTTCCTTAACTCGTTTCATA 78014 || ||| || || || | || ||| | |||| ||||| || ||||||||| Sbjct 2228 GGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCC---ACCCGTTTCATA 2172 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || |||||||| ||||||||||| |||| || || | || || |||||| || Sbjct 2171 AACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACC- 2113 Query 78075 GTATTCTTTTTA---AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 | |||||| || || |||||||| | | || | |||||| || || | ||| Sbjct 2112 --GTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTAT 2055 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 || || | ||| ||||| || || || || | |||| ||| |||| ||| Sbjct 2054 ATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTA 1995 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251 | || | ||||| ||||| || |||||||| | ||||| || ||| |||||| || Sbjct 1994 AACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTG 1935 Query 78252 CCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 | | || || || || || || || || || || ||| || || || Sbjct 1934 TTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCAC 1875 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || | |||||||| || || ||||| || || |||||| ||| || | | Sbjct 1874 GCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAA 1815 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 ||||| |||| ||| | || |||||| |||||||| || || || | ||||| Sbjct 1814 AAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGA 1755 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTA---TGTCCCAT 78488 ||||| | || | ||| | | | ||| || || | ||| | || | ||| | | Sbjct 1754 GTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTC--T 1697 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTAT-T 78547 || || || |||| || || ||||| | | || || |||| || | || ||| | Sbjct 1696 TG-TGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCA-CGACTTTTCC 1639 Query 78548 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 78607 ||| | || | ||| ||| || | ||||| || || ||||||| || ||| Sbjct 1638 ATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAA 1579 Query 78608 GTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGT 78648 ||| | |||| ||| || |||| ||||| | |||||||| Sbjct 1578 GTCCCGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTTGT 1538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694630706099680