Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1055 113 9e-20 seq925 111 3e-19 seq452 91.5 3e-13 seq16 91.5 3e-13 >seq1055 Length=24595 Score = 113 bits (124), Expect = 9e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || || |||||||| | ||||| || || || || || || || || ||||||||| Sbjct 13499 TTCTGAATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATC 13558 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| |||||||| |||||||| ||||| || ||||| || | || Sbjct 13559 AGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTC 13617 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||| || | || || || | ||| || ||||| || ||||||||||| || || Sbjct 13618 AATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAAA 13677 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 13678 GATCTGCAT 13686 >seq925 Length=32479 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| || || |||||||||| ||| ||| ||| Sbjct 12223 TCCTTGTCCTCACCGGACTGGAAACGCCACTGAATATACTGATTGGCTGTCTCGTCGAGA 12164 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| |||||||| |||| |||||| |||||| Sbjct 12163 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCAAAACGCATGGAAGGATGC 12104 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || || | || | || | || || || |||| ||||| || || | Sbjct 12103 TTCCACACCTGTCCACTCGTCGGCTCAACCTCACCAGTCAGCATCTTAATCAGCGTCGAT 12044 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 12043 TTACCGGCACCGTT 12030 >seq452 Length=4125 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || || || || ||||| ||||||||||| || Sbjct 858 CCACCACGAAGACGTAGCACCAAGTGCAAGGTTGACTCCTTTTGAATGTTGTAGTCCGCT 799 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 | ||| ||||||||||| || || || || |||||||||| |||||| ||||| Sbjct 798 AACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTC 746 >seq16 Length=23387 Score = 91.5 bits (100), Expect = 3e-13 Identities = 238/363 (66%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 273584 AATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGA 273643 |||||| ||| |||||||| | ||||| | |||||||| || ||||||||| Sbjct 10449 AATAATGTCTAGTGGGTTGTAGTTGGGAACAGAGCTGGACCAACCCGTTCCAATACCGTC 10508 Query 273644 AGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATC 273703 | || || || || | | ||||||| || | || | || || || ||| | Sbjct 10509 ACTGCCGTTAACGAGTACCATGGGGATAACCGGAATGTACCACTCCGGTTCGATTGACTG 10568 Query 273704 ACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGT 273763 || || |||| | ||||||| || | ||| |||| | | | | | | ||||| Sbjct 10569 GCCGTCTTCGTCCAAATACTTCAGCACATCATTATCCAAAGGATCATAGAGTCTACGCGT 10628 Query 273764 CTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAG 273823 | | | || || |||||||| || | | || || ||||||||||| | Sbjct 10629 GAGTTGTTCCAAATTTGTGAAAATATAACGAGAGCTGGCCGCATCCTTGCCACCCATTAA 10688 Query 273824 CCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATC 273883 | || |||||||||||| |||| || || ||||||||||| |||||| |||| Sbjct 10689 ACGCGTACCAAACTGACCGATGGGCGACAGAAGGTGAATGTTGTTGCTTCCGACGAAATC 10748 Query 273884 CTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTG 273943 ||| ||||||||||||||| ||||| | | |||||||| || || || ||| Sbjct 10749 CTGTGCCATATTCACGATACAGCCCTGCAAACTTTGTTCGCCGTGATGGTACGCAGAGTG 10808 Query 273944 TTC 273946 ||| Sbjct 10809 TTC 10811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046680364425098