Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3839 123 5e-23 >seq3839 Length=24414 Score = 123 bits (136), Expect = 5e-23 Identities = 660/1037 (64%), Gaps = 33/1037 (3%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| || |||||||| |||| |||| ||| || Sbjct 20268 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGAATATACTGATTGGCTGTCTCGTCGAG 20327 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| |||||||||||||| ||||| |||||||| |||| |||||| ||||| Sbjct 20328 ATGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCAAAACGCATGGAAGGATG 20387 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || | || | || | | || || |||| |||||| || || Sbjct 20388 CTTCCACACCTGTCCACTCGTCGGCTCAACCTCACCAGTCAGCATCTTAATCAGCGTCGA 20447 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCA-- 319227 ||| || |||||||| || | ||| | || | || | | || | | || Sbjct 20448 TTTACCGGCACCGTTGGGTCCAAGTACAGCAATAC--GACTAGACAGAGCGCACGTCACC 20505 Query 319228 TTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 319286 | ||||| | | || || || ||||||| | | | ||| ||| || Sbjct 20506 GAGATGTTGTTGATCGACGGCTTGGGGGTTCCAGGATACTGGTA-CGAGCACTTCGTCAG 20564 Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC-- 319344 ||||||| |||| ||||| | | ||||| || ||||| |||||| Sbjct 20565 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGT 20624 Query 319345 ---TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTC 319401 | ||| | ||| || ||| || ||||||| | | || || || | Sbjct 20625 AAACTTCACATTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGC 20679 Query 319402 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 319461 | ||| || ||| ||||| |||||||| |||||||||| || | ||||| || Sbjct 20680 TCCACAAAACGGGAAAGATTGCCCTTGTAGATCTTCAGCTTGCGG---GTCTCGTAGTGA 20736 Query 319462 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 319521 ||||| ||||| || | ||| ||||| || |||||||| ||||| || | ||| Sbjct 20737 ATAATGTTTGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATAATCGACGTT 20796 Query 319522 ACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGG 319581 || | | || ||||||| | || |||| ||||| || | |||| Sbjct 20797 ACATTTGTCAGACCCGTCAGGTAGTTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGG 20856 Query 319582 TTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 319641 || |||||||| ||||| | || | | ||| ||| | ||||| ||||| || || | Sbjct 20857 TTCGTCGGCTCATCAAGCAACAAGATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCC 20916 Query 319642 AGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA-ATATC 319700 | |||||| ||||| || || |||||||| || || ||| ||| | Sbjct 20917 AATTTCATCTTCCAACCACCAGAAAGAGTACCAACGCCCTGAGCTTGCATGTCAGGGGTG 20976 Query 319701 AAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTTA 319759 ||| ||| |||| | ||||| ||| || | || | | |||| ||| | Sbjct 20977 AAACCCACACCG--GCAAGAGTGTCCTCGACCTCCTTGCG---CGGAGTGTT---CTTCA 21028 Query 319760 CTTGTTCAT-CATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGA 319818 | |||| || | | ||| ||||| | | | | | || || || | | || Sbjct 21029 GATCCTCATCCACTAG-AATAAAGTCCACCACGGACAGCTCAGCCTCAGAAGCCTGCAGG 21087 Query 319819 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAGCTGGCC 319877 | ||| ||||| | |||| |||| | | ||| | ||||| || || |||||||| Sbjct 21088 TTGTGCTCCACAAACACAGTCTTCAGCTCGT-CGCGGCTAGGGAAGCCCTCCAGCTGGCC 21146 Query 319878 GTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 319937 ||| ||| |||||||||| || || ||||| ||||| || |||||||||||||| Sbjct 21147 GTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCGTTAGGACCACACAGACCGTA 21206 Query 319938 GCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGC 319997 |||| || || || ||| | || | ||||||| ||||| | |||||||| || Sbjct 21207 ACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAACAGAATCATACCACCATAGGC 21266 Query 319998 CAGAGAAAATTCACAAT 320014 || || || || |||| Sbjct 21267 AAGCGAGAACTCGCAAT 21283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057769515452600