Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3868 89.7 4e-13 seq5 86.0 5e-12 >seq3868 Length=24320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| ||||| || ||||||| || || || | || |||||||| ||||| ||| | | Sbjct 11104 CCTTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 11045 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | |||||||| || | ||||||||||| ||| || || || || | | Sbjct 11044 TCAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 10985 Query 21106 CGA--CAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | | |||| || |||||| |||| |||||||||||||| || || || || || Sbjct 10984 CAATGCAGTCGGAC--GGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCAC 10927 Query 21164 AAATATTTGCAT 21175 ||| || ||||| Sbjct 10926 AAAGATCTGCAT 10915 >seq5 Length=21317 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||||||| ||||| || ||||||||||||||||| |||||||| Sbjct 17520 TCCACCACGAAGACGTAGCACCAAGTGCAAGGTTGACTCCTTTTGAATGTTGTAGTCCGC 17461 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 | || || | ||||||||||| || || ||| | || || | ||||||||| Sbjct 17460 TAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCC 17406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422238511938320