Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3527 159 4e-34 seq3868 86.0 6e-12 >seq3527 Length=112193 Score = 159 bits (176), Expect = 4e-34 Identities = 378/562 (67%), Gaps = 8/562 (1%) Strand=Plus/Minus Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGAC 116692 ||| |||||| |||||||| || |||||||| ||||||||||| | ||| ||| | ||| Sbjct 71353 GACGTGTGGCAAATGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGAC 71294 Query 116693 CT-GTCCAAGGACACGAGCGACTGG-GAGCGCTTGAACGACAACGAGCGCCATTTCATCA 116750 | || || | | | || || ||| | | ||| | ||||| || || ||||| || | Sbjct 71293 TTGGTGCATGATCTCAAG-GATTGGAAAACACTT-ACGGACAATGAACGTCATTTTATTA 71236 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GA 116808 |||| ||||| |||||||| || ||||| || ||||| || || |||||||| | | || Sbjct 71235 AGCATGTGCTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGA 71176 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGC 116868 | ||| || | || ||||| || | || || || ||||| ||||| ||||| || || Sbjct 71175 AC-TTTAGC-AATGAAGTGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAAATTGC 71118 Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928 || ||||| | |||||||| | ||||| || || || || || | | | Sbjct 71117 TATCGAGAATATTCACTCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGC 71058 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | ||||| | | | || || || || ||||| || || ||||| |||| || Sbjct 71057 TGTAGAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGC 70998 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 | | ||||| || ||| | | | | | | | | | || || || || |||| Sbjct 70997 CAATTGGGCACTCAAGTGGTGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGC 70938 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 || || | || || ||| | ||||| || ||| ||| | | || ||||||||||| Sbjct 70937 GTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAA 70878 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 |||||| || || ||||| || || | ||| |||||||| || | || || || Sbjct 70877 GAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGG 70818 Query 117169 TCTGCATTGCGACTTTGCCTGT 117190 | |||| |||||||| ||| Sbjct 70817 TATGCACACGGACTTTGCTTGT 70796 >seq3868 Length=24320 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||| || | ||||| || | || Sbjct 10915 ATGCAGATCTTTGTGAAGACTTTGACAGGCAAGACCATTACTTTGGACGTGGAGCCGTCC 10974 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| || | | | ||||| | ||||| | ||||| || || || || | |||||| Sbjct 10975 GACTGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATTCCACCTGACCAG 11034 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || ||||| |||||||| || | || || || |||||||| Sbjct 11035 CAACGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACACTTTCGGACTACAAT 11094 Query 40870 ATCCAGAAGG 40879 || ||||||| Sbjct 11095 ATTCAGAAGG 11104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515193310235200