Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3786 89.7 4e-13 >seq3786 Length=9249 Score = 89.7 bits (98), Expect = 4e-13 Identities = 229/341 (67%), Gaps = 12/341 (4%) Strand=Plus/Plus Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 || || |||| || || |||| | | |||||| ||||| ||||| ||||| |||||| Sbjct 2660 ACTTGCGCGACCAAACGCGTTAGCAACGCATAGCTGGCAATATTAAATGGCACACCTAGT 2719 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAAC 97239 ||||| || || || | || || | ||| || || || | ||||| ||| |||||| Sbjct 2720 CCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCATCCGCCACGTAAAAC 2779 Query 97240 TGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGAC--ATTCCAAG 97297 |||| || | || || || || |||||||||| | ||| || | |||||||| Sbjct 2780 TGACAAAACATGTGGCACGGAGGTAACGCCATTTCATTTAGATC--AGCCGGATTCCAAG 2837 Query 97298 CACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAAT--TATCTGCTT 97355 | ||| || |||| | || | ||||| || | | ||| || ||| || Sbjct 2838 CTGACAGCACAATTCGGCGGTCACTGGGGTTCGTACGGAGCTTATGGATAACATCGGC-- 2895 Query 97356 TAATTGATCAACGCCTTCTCCACCATAATTGTGCTT--AAGACCTTGATATTCTGCTCCA 97413 | || || ||||||| || | ||| | | || | | | || || || | || ||| Sbjct 2896 AAGCTGGTCCACGCCTTGGCCTCTATAGTCG-GCGTGCATGTCCGTG-TACTTGGCACCA 2953 Query 97414 AAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454 ||||| | |||||| || || || || |||||||| ||||| Sbjct 2954 AAATGACGCCATTGAAAACCGTATACCGGTCCAAGATCTCC 2994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346767009751400