Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3786 123 2e-23 >seq3786 Length=9249 Score = 123 bits (136), Expect = 2e-23 Identities = 277/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 20209 CGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAA 20268 ||| | | ||| ||| | || || || || || ||||||||| | |||||||| || | Sbjct 3003 CGTGAGGTGGGAGATCTTGGACCGGTATACGGTTTTCAATGGCGTCATTTTGGTGCCAAG 2944 Query 20269 TATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT 20328 || |||||| || | | ||| || ||||| || || || | ||||||| Sbjct 2943 TACACGGACATGCACGCCGACTATAGAGGCCAAGGCGTGGACCAGCTTGCCGATGTTATC 2884 Query 20329 AATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAA 20388 || | |||||||| | ||| | ||||| | | | || ||||| | Sbjct 2883 CATAAGCTCCGTACGAACCCCAGTGACCGCCGAATTGTGCTGTCAGCTTGGAATCCGGCT 2824 Query 20389 GATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 ||| | | |||||| || ||||| || || ||| | || || |||||||| || || Sbjct 2823 GATCTAAATGAAATGGCGTTACCTCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGAT 2764 Query 20449 AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTC 20508 ||| ||||||| || ||||| || || || || || |||||||| ||||| || || Sbjct 2763 GGCGAACTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTAGGTGTGCCATTT 2704 Query 20509 AATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG 20568 |||||||| || |||||| |||| ||| | || | || || || || | ||| | Sbjct 2703 AATATTGCCAGCTATGCGTTGCTAACGCGTTTGGTCGCGCAAGTGGTAGGACTGAAACCT 2644 Query 20569 GGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 || || || |||| ||| || ||||||||||| || | ||||| |||| || Sbjct 2643 GGCGAGTTCATCCATGTCATTGGTGACGCGCATATCTATTTGAATCACGTAGAGCC 2588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399164442478900