Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3786 131 3e-25 >seq3786 Length=9249 Score = 131 bits (144), Expect = 3e-25 Identities = 424/642 (66%), Gaps = 26/642 (4%) Strand=Plus/Minus Query 35157 GAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACG 35216 |||| || || || || | || | |||||| | || ||||| || ||| | || | Sbjct 3233 GAACAGGCACCGGGACGTTGTCTGTGTTTGGAGCGCAGATGAGATTTAGTCTGAGGGA-G 3175 Query 35217 ACACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTC 35275 | | |||| ||| || || || |||||| | || ||| |||| || | ||||| | Sbjct 3174 AATGTCTTCCCGTTGCTGACGACGAAGAAAGTGTTTTGGCGAGGTGTGGCCGAAGAGTTG 3115 Query 35276 TCGTGGTTCATCAGGGGCAATACAGACGC-CAAAGAATTGGCCAAGAAGAAGATACACAT 35334 ||||||||| || || | ||| | || || | || || |||||| || ||| Sbjct 3114 CTGTGGTTCATTAGTGGTGACACAAATGCTCACACGCTTCAGCA-GAAGAATATTTCCAT 3056 Query 35335 CTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTT---AT-ACGATAGAG 35390 |||| ||| ||||| ||||| || | ||||||||||||||| | || ||| || Sbjct 3055 CTGGGACGGCAATGGATCGCGCGAGTACTTGGACAGTAGAGGGCTGCAATCACGTGAG-- 2998 Query 35391 CAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA-T 35449 | ||||||| | ||||| |||||||| || |||||||||||||||||||| | || Sbjct 2997 --GTGGGAGATCTTGGACCGGTATACGGTTTTCAATGGCGTCATTTTGGTGCCAAGTACA 2940 Query 35450 GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAG 35509 || || | |||| |||| || | || | || || | ||| || | | | Sbjct 2939 CGGACATGCAC-GCCGACTATAGAGGCCAAGGCGTGGACCAGCTTGCCGATGTTATCCAT 2881 Query 35510 ACCCTGAG-AGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGA 35568 | || | | || |||| ||| | | || | || | || |||||||| || Sbjct 2880 AAGCTCCGTACGAACCCCAG-TGACCGCCGAATTGTGCTGTCAGCTTGGAATCCGGCTGA 2822 Query 35569 TCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGG 35628 ||| | ||||| | ||||| ||||||||| | ||| ||||| ||||| |||| Sbjct 2821 TCTAAATGAAATGGCGTTACCTCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGG 2762 Query 35629 AGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTC 35686 ||| ||||||||||| |||| ||||| || || ||| || | || ||||| || Sbjct 2761 CGAACTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATG--GGACTAGGTGTGCCATTT 2704 Query 35687 AATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCG 35746 |||||||| || | | || || | | || | || |||| || || ||||| Sbjct 2703 AATATTGCCAGCTATGCGTTGCTAACGCGTTTGGTCGCGCAAGTGGTAGGACTGAAACCT 2644 Query 35747 GGAGAGTTTATCC---TCACTCTTGGTGACGCACACATTTAT 35785 || ||||| |||| ||| |||||||||| || || ||| Sbjct 2643 GGCGAGTTCATCCATGTCA---TTGGTGACGCGCATATCTAT 2605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989533030239100