Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3786 132 4e-26 >seq3786 Length=9249 Score = 132 bits (146), Expect = 4e-26 Identities = 304/452 (67%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| ||||||||||| || | | || ||| | | || || || ||||| || || Sbjct 2548 CGGGAACGGACGCGGTGTACGCGTCAACTGTTGTCGAAGTGGCTCTACGTGATTCAAATA 2607 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 | || |||||||| | | || | || || || || |||| || || || || Sbjct 2608 GATATGCGCGTCACCAATGACATGGATGAACTCGCCAGGTTTCAGTCCTACCACTTGCGC 2667 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 || || | ||| || | || |||||||| || ||||| || || || || |||||||| Sbjct 2668 GACCAAACGCGTTAGCAACGCATAGCTGGCAATATTAAATGGCACACCTAGTCCCATGTC 2727 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| |||||| ||||| || || ||||||||||||||||| || Sbjct 2728 GGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCATCCGCCACGTAAAACTGACAAAA 2787 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || ||||| | ||||| || || || || ||||| || ||| || Sbjct 2788 CATGTGGCACGGAGGTAACGCCATTTCATTTAGATCAGCCGGATTCCAAGCTGACAGCAC 2847 Query 21188 GATGCGCCGATC-GTGGGG-CCGCCTGTTAATTA--GATCCACCACGTAACGCAGCTGGT 21243 || || || || ||||| || | ||| ||| || || | ||||||| Sbjct 2848 AATTCGGCGGTCACTGGGGTTCGTACGGAGCTTATGGAT-AACATCGGCA---AGCTGGT 2903 Query 21244 CCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCC 21303 |||| || || || |||| ||||| || |||||| || |||||||| | || Sbjct 2904 CCACGCCTTGGCCTCTATAGTCGGCGTGCATGTCCGTGTACTTGGCACCAAAATGACGCC 2963 Query 21304 ACTGGAACCCGTACACCGGCCCCAGATCGCCC 21335 | || || ||||| ||||| || ||||| ||| Sbjct 2964 ATTGAAAACCGTATACCGGTCCAAGATCTCCC 2995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427755041649600