Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3527 226 4e-54 seq185 188 1e-42 >seq3527 Length=112193 Score = 226 bits (250), Expect = 4e-54 Identities = 433/629 (69%), Gaps = 17/629 (3%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | ||| || || || ||||| ||| || || | ||||||||| ||||| || | Sbjct 70789 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 70848 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | | || || ||||| || ||||| || || |||||||| || || ||| || || ||| Sbjct 70849 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCA 70907 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC-TGGCGCT 50129 || ||||| || |||||||| | ||||| || | || | || | || || | | Sbjct 70908 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 70967 Query 50130 -----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 |||| |||||| | ||||||| ||| ||||| || ||||| || ||||| Sbjct 70968 CGGGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTA 71024 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || || ||| | ||||| | ||| || | || |||| ||| ||||| || | Sbjct 71025 TCAATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGC 71084 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 || ||| | ||||| ||||| || || || || || ||||| ||||| || || | | Sbjct 71085 AGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGA 71144 Query 50305 GCCTC-GGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATT 50361 || || |||| | |||||||| | | ||| ||||| || | ||| |||||||| || Sbjct 71145 GCTTCAGGTACT-TGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAATG 71201 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421 || ||||||||||||||||| || | ||||| || |||||||| ||| ||| || Sbjct 71202 CCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTA 71261 Query 50422 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 50481 ||| | |||||||| |||| ||| | | || | ||||| ||||||| || || Sbjct 71262 AGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAA 71321 Query 50482 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAAT 50541 ||||| || || || ||||| | ||| | ||| | | || || || |||| ||||| Sbjct 71322 GCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAA 71381 Query 50542 CTATTTGGATTTGGTGCAAGGATCGGTTC 50570 | ||| || || |||| | |||||| Sbjct 71382 CGATTCGGGTTCACAACAAGAAACGGTTC 71410 >seq185 Length=10224 Score = 188 bits (208), Expect = 1e-42 Identities = 790/1235 (64%), Gaps = 18/1235 (1%) Strand=Plus/Minus Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416 ||||| ||||| || ||||| ||||| || || || | || | ||| || || | | Sbjct 2818 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2759 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 || || | |||||| || || || || | || ||||||||||| || | ||| | || Sbjct 2758 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2699 Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536 | | | || || || ||| |||| || || || || || | || |||| || || Sbjct 2698 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2639 Query 79537 AGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT 79596 || || | | | || || |||||| | || || | || || || || Sbjct 2638 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2579 Query 79597 ATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 |||||| | || || ||||| |||| || || ||||| ||||||| | | Sbjct 2578 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2519 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | ||| | |||| ||| ||| | |||||| | || || || | ||| || || Sbjct 2518 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2459 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || ||| ||| || |||||| | || || || || || || |||||||| Sbjct 2458 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2399 Query 79777 GATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTT 79833 | |||| ||| ||| ||| | | || | || || ||| | |||| | | | | Sbjct 2398 GCATCTAAAAT-GCTGAACCATAGCTGCT-GCGCATTAATTGT---CTTGCGAGCGCGTC 2344 Query 79834 TCTC--TTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAAT 79890 ||| ||||||| | | ||| || ||| ||||||||||||||||| |||| | Sbjct 2343 CCTCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGA 2285 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||| ||||| ||||| | || ||||| |||| | | | || ||||||||| Sbjct 2284 GCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATA 2225 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || |||||||||||||| ||||| |||| || | | || ||| || || || Sbjct 2224 AACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACC- 2166 Query 80011 GTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 | |||||| || || || ||| | | | || | ||||||||| ||||||||| Sbjct 2165 --GTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTAT 2108 Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 || || | ||| |||||| ||| || || || | ||||| || |||| ||| Sbjct 2107 ATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTA 2048 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 80187 | || | ||||| ||||| || || || || | |||||| || || |||||||| Sbjct 2047 AACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTG 1988 Query 80188 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 80247 | |||| || || || || | || || || || ||| ||| || || | Sbjct 1987 TTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCAC 1928 Query 80248 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGA 80307 || ||| | || || || ||||| || || || || |||||| ||| |||| | Sbjct 1927 GCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAA 1868 Query 80308 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 ||||| |||| |||| | ||| |||||| |||||||| || || || | || || Sbjct 1867 AAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGA 1808 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 80427 ||||| | || | ||||| | | ||||||||| | ||| | || |||| | Sbjct 1807 GTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTCTTG 1748 Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || || |||| || || ||||| | | || || |||| || |||| || ||| Sbjct 1747 TGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGACTTTTCCATTA 1688 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 | || | || ||| || | ||||| || || ||||||| || |||||| Sbjct 1687 ACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAAGTCC 1628 Query 80548 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 || |||| ||| || | ||||| || | ||| || Sbjct 1627 CGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTT 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718232706992800