Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3527 122 1e-22 seq3786 120 5e-22 >seq3527 Length=112193 Score = 122 bits (134), Expect = 1e-22 Identities = 343/513 (67%), Gaps = 23/513 (4%) Strand=Plus/Minus Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||| |||||||| || | || |||| || || | ||||| ||||| ||||| || || Sbjct 70964 GTCATCGTACGCGGAACGTCTATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGG 70905 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || ||| | ||||||||||||||||| || || || ||||| || || | | Sbjct 70904 CTCCTTCTGCT-CTATCTTTTGGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTCT 70846 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-T 125585 |||||| | || ||| || || || | ||| |||||||| ||| ||| | Sbjct 70845 CGAACGAGCTAATTAGTCGTGATGAAGGTATGCACACGGACTTTGCTTGTCTCATGTACT 70786 Query 125586 CGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACC 125645 || |||| | | | ||| |||||| | | || | | ||| | Sbjct 70785 CGAAACTGGTTAA---CAAATTGC-----CAGCGA-GTCGTGTGCA-CGAGATTATTCGT 70736 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGG 125704 ||||| |||| || || || |||||| | || || || || ||| ||| | ||||| Sbjct 70735 GATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCGCTTCCTGTCGAGC-TCATTGG 70677 Query 125705 CATGAACT--GCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||| ||| || ||||| ||||||| ||||| ||||| || ||||| || ||| Sbjct 70676 CATGAACTCGGCA--CTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTCTGCTATAC 70619 Query 125763 GAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 || || ||||||||| | ||||||||||| || || | ||| | || Sbjct 70618 TCACTGGGTGTTGCCAAGATTTATCATGCCAAGAATCCATTCGACTGGATGGATATGATC 70559 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTACG 125880 || ||| | || |||||||||||||||||||| || ||||||| | || ||| | Sbjct 70558 TCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCGAGTATTCCAAGGCT--G 70501 Query 125881 GTGTCGGTGTCAATTTGGAGGATAATGTGTTTA 125913 |||| |||||| |||||| | ||||||| Sbjct 70500 GTGTGGGTGTCGCGGCTGAGGATCAAGTGTTTA 70468 >seq3786 Length=9249 Score = 120 bits (132), Expect = 5e-22 Identities = 178/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284 |||||||| || ||| | | ||||||| |||| ||||| ||| ||||| | |||||| Sbjct 2835 TGGAATCCGGCTGATCTAAATGAAATGGCGTTACCTCCGTGCCACATGTTTTG-TCAGTT 2777 Query 70285 TTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 |||| | |||||| || |||| ||| ||||| ||| | ||||||||||| || Sbjct 2776 TTACGTGGCGGATGGCGAACTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATGGGACT 2717 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 ||||| || ||||| ||||| |||||| | || | |||| || | || || | Sbjct 2716 AGGTGTGCCATTTAATATTGCCAGCTATGCGTTGCTAACGCGTTTGGTCGCGCAAGTGGT 2657 Query 70405 CGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464 || |||||| | ||||||| | || |||||| ||||| || | ||||| ||||| Sbjct 2656 AGGACTGAAACCTGGCGAGTTCATCCATGTCATTGGTGACGCGCATATCTATTTGAATCA 2597 Query 70465 CATCGAGCCA 70474 | | |||||| Sbjct 2596 CGTAGAGCCA 2587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741021961775200