Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq185 325 1e-83 seq3527 132 1e-25 seq201 91.5 4e-13 >seq185 Length=10224 Score = 325 bits (360), Expect = 1e-83 Identities = 1167/1803 (65%), Gaps = 45/1803 (2%) Strand=Plus/Plus Query 363379 GAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGT 363438 |||||||| |||||||| || || | |||||| || || | |||| | ||||| Sbjct 1635 GAGTATGACTATTTCGGATTCAAAACACTTGAGAAAGGATATCTCTTTCGTGTTAATGGA 1694 Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 | | || || || ||||| || | | ||||| |||||| | |||||||| Sbjct 1695 AAAGTCGTGGAGCGACCGCAACAATTAATTATGCGCGTTGCTTTAGGTATCCACAAGAAC 1754 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCA 363554 || || | || || | || || || || | | || ||| || | || || || Sbjct 1755 AATATTCAAGCGGCTTTGGAGACGTACGAGTTGAT--GT-CTCAGAAGTTTTTT-ACTCA 1810 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 || |||||||| ||| ||||||||||||| | || || |||| || || ||| | Sbjct 1811 TGCGACGCCAACGTTGTTTAATGCTGGAACTCCTCGCCCCCAACTGTCCTCGTGTTTTTT 1870 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 ||| ||| |||| ||||| || || ||||| | ||||||| | ||| | ||||| Sbjct 1871 ACTAGCTATGCAGGATGATTCGATTGAAGGTATTTATGACACATTGAAGCAATGTGCGTG 1930 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG 363734 |||||||| || || || ||||| | || ||||| | || || ||||| Sbjct 1931 CATTTCCAAATGGGCTGGTGGGATTGGCATTAGTATGCACAACATACGAGCCACTAACAG 1990 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 || ||||| ||||| || | ||| || ||| | |||||||| | || |||||| | Sbjct 1991 CTATATTCGTGGCACTAATGGTTCCTCTAACGGGATCATTCCCATGTTACGGGTGTTTAA 2050 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || || | ||||| ||||| |||||||| || |||||||| | |||||||| || Sbjct 2051 CGACACGGCCCGATACGTGGACCAAGGTGGAGGCAAACGCAAAGGATCCTTTGCTATATA 2110 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAA 363913 | ||||| |||||||| | ||||||||||| || || || ||||| ||||| | Sbjct 2111 CTTGGAGCCGTGGCATGCCGACGTGTTTGAGTTTCTAGACCTGCGTAAAAACCACGGTA- 2169 Query 363914 AAGAGGAATTG---CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTA 363970 | |||||| || || ||||| | ||||| || || ||| || |||| | |||| Sbjct 2170 ---ATGAATTGCACCGAGCGCGTGACTTATTCTACGCTCTATGGATTCCTGATCTGTTTA 2226 Query 363971 TGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTC 364030 |||| || ||||| || | || ||| | || || || ||||| ||| | || Sbjct 2227 TGAAACGGGTGGAAGCTAATGGCAAGTGGAGTTTATTCTGTCCGAACGAAGCTCCTGCTC 2286 Query 364031 TTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA 364090 | | ||| ||||| ||||| | | | || || |||||||| ||| ||||||| Sbjct 2287 TCTACGAGTGCTGGGGAGACGAGTTCGAGACGCTTTATGAAAAGTACGAAAAGGAGGGAC 2346 Query 364091 AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 ||||| ||||||||| || ||| |||||||||| ||| | ||| ||||||||| Sbjct 2347 GCGCTCGCAAGACAATTAATGCGCAGCAGCTATGGTTCAGCATTTTAGATGCGCAGATTG 2406 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 |||| || || | |||| | | || || | |||||| ||||||||||||||| Sbjct 2407 AGACGGGCGTGCCATTTATGCTCTTTAAGGACGCAGCCAACCGTAAGTCCAACCAGCAGA 2466 Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCG 364270 | ||||| || || | || ||| | || ||| | || || || || | || | Sbjct 2467 ATCTTGGCACGATCCGATCCAGTAACTTGTGCTGTGAGGTAATGGAGTATACGTCGCCGG 2526 Query 364271 ACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTA 364330 | ||| ||||| || ||| | ||||| | || | || |||||| | || ||| Sbjct 2527 ATGAGGTGGCCGTGTGCAACTTGGCGTCTGTGGCTTTACCTAAGTTTGTGGAGGACGGTG 2586 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGG 364390 || ||| || || | || ||||| || || | | || | || || |||||| Sbjct 2587 TCTTCGACTACAAGAAGCTGTATGATGTGACGAAGGTGGTCACCCGTAACCTTAACAAGG 2646 Query 364391 TTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGC 364449 |||| ||| || || || || || | || || ||| | || || ||||| || ||| Sbjct 2647 TTATTGACGTCAACTACTACCCGGTTGCAGAGGCTCGAAAG-TCCAACATGCGCCACCGC 2705 Query 364450 CCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTT 364509 || | || ||||||| ||||| || || || | ||| || | | || || || Sbjct 2706 CCTGTGGGCATTGGTGTTCAGGGTCTGGCCGATGCTTTCATTCTCATGAACTATGCGTTC 2765 Query 364510 GATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568 || || | | ||||||| || || ||| | || ||||| || || |||| ||| | Sbjct 2766 GA-AAGCGAGCAGGCTCGTGAACTGAACAAGAATATTTTTGAGACCATCTATTATGCTTC 2824 Query 364569 AAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627 || || | | || ||| |||| | | ||| |||| || | | |||| | Sbjct 2825 GATGGAGACATCCATGGAGATTGCCAAAGAAC-TGGGCCCGTACGAGACATTTCAGGGCT 2883 Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA---CGCCATCTGTCC 364684 |||| |||| | |||||||| || | ||| ||||| || | |||| | Sbjct 2884 CCCCGGCCAGCAAGGGTATCTTCCAGTTCGACATGTGGGGTGTCACCCCGTCCTCTGGTC 2943 Query 364685 GATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCG 364744 ||| ||||| | | ||||| | ||||| || | |||||||| | Sbjct 2944 TTTGGGACTGGACCGCCTTGAAGGAGAACGTGATTAAGCACGGCATCCGCAACTCTTTGC 3003 Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804 | || || ||||| || ||||| ||||| |||||||| || |||||||||| | ||| Sbjct 3004 TAGTGGCTCCTATGCCTACTGCTTCGACTGCTCAGATCCTTGGTAACAACGAGTCCATCG 3063 Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864 | |||| || || | || || || || ||| | || || || || | || | Sbjct 3064 AGCCGTACACGTCGAACATGTACAACCGACGTGTGCTTGCTGGTGAGTTCACGATCGTGA 3123 Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG---- 364920 | |||||||| | || || || ||| | | | || ||| || || | Sbjct 3124 ACAAGTACCTGATGAAAGAGCTGATCGATCTGGATATCTG----GAC-GCCCGAGGTCCG 3178 Query 364921 -AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA--TTTCCAGAAGAT 364977 ||| | || | || |||||||||||| || | | || |||| || || Sbjct 3179 TAACCAGATACTGAACGACCGTGGTTCTGTGCAAAAGGT--GAAGACCATTCCGGACCAT 3236 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACTC--TCATTGATATG 365034 | || | |||||||| || |||||||| || || ||| || | | ||| || Sbjct 3237 GTCAAAGAGAAGTACAAAACAGTGTGGGAAAT---CAAGCAGAAATCGGTGTTAGATCTG 3293 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094 |||| || || ||||||| || || ||||| |||||| ||||| | ||| | | Sbjct 3294 TCGGCTGACCGTGGTGCTTACATTTGCCAGAGTCAGTCGCTTAACATTCACATCGCCGAC 3353 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154 || || | || || || |||||||| || |||| |||||| || |||||||| Sbjct 3354 CCGACGATCAGTAAACTCACCTCCATGCACTTTTACGCTTGGAAAAAGGGGCTTAAGACG 3413 Query 365155 GGT 365157 ||| Sbjct 3414 GGT 3416 >seq3527 Length=112193 Score = 132 bits (146), Expect = 1e-25 Identities = 300/448 (67%), Gaps = 5/448 (1%) Strand=Plus/Minus Query 22485 CGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG 22544 |||||||||||| | || |||||| ||| |||||||||||||| ||||| | || || Sbjct 70955 CGCGGAACGTCTATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTG 70896 Query 22545 TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTT 22604 | ||||||||||| || ||||||| | ||||| ||||| | || || || ||| | Sbjct 70895 CTCTATCTTTTGGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCT 70836 Query 22605 AATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATAT 22664 |||||| || ||||| ||| | || || || ||||| ||| | | || ||| | | Sbjct 70835 AATTAGTCGTGATGAAGGTATGCACACGGACTTTGCTTGTCTCATGTACTCGAAAC---T 70779 Query 22665 CATTCATAAACTTCCATATGAAAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTG 22723 || | ||| | ||| || | ||| | || |||||| |||| || | ||| Sbjct 70778 GGTTAACAAATTGCCA-GCGAGTCGTGTGCACGAGATTATTCGTGATGCTGTGACAATTG 70720 Query 22724 AACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAA 22783 | | ||| | | || || | || || |||||||| || || | | | | Sbjct 70719 AGCACGAGTTTGTGCGTGACTCGCTTCCTGTCGAGCTCATTGGCATGAACTCGGCACTCA 70660 Query 22784 TGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGC 22843 || || || ||| | || || || || ||||| || ||||| ||| ||| ||| Sbjct 70659 TGTGTCAGTACATTGAGTTCGTGGCTGACCGTCTGCTATACTCACTGGGTGTTGCCAAGA 70600 Query 22844 ATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCA 22903 |||| | | | |||||||| || |||||||| | || || || |||| ||||||| Sbjct 70599 TTTATCATGCCAAGAATCCATTCGACTGGATGGATATGATCTCGCTACAAGGCAAGACCA 70540 Query 22904 ATTTCTTCGAAAAAAGAGTTGGTGAATA 22931 | || ||||| ||| | || || || || Sbjct 70539 ACTTTTTCGAGAAACGTGTGGGCGAGTA 70512 >seq201 Length=18883 Score = 91.5 bits (100), Expect = 4e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 145537 CTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGAT 145596 ||||||| || || ||||| || | ||| | |||| ||| ||| ||| |||| Sbjct 18227 CTTCATCAGACAAACCAGTACCCAGCTTTGTAATTGGTTGGTACATTTCGGTGTCCGGAT 18168 Query 145597 CATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACC--GGTATA 145654 |||| || || || |||||||| ||||||||||| || || || || || || || Sbjct 18167 CATAGCAAGCTAGTAGATATGCACCGTATACACCAGTGCGCTTGCCACGTCCATGGAATG 18108 Query 145655 CCCCGCAATTGGTACAAGATCACAACTA--TCACCCATTCCGGCAAGATAATCCTTTTTA 145712 | || ||| || || || || ||| ||||| || ||| | ||||||||||| || Sbjct 18107 CACC--AATCGGAACTAGGTCT--ACTGAGTCACCAATGCCGTCGAGATAATCCTTCTTC 18052 Query 145713 AGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAG 145751 || |||||||| ||| ||||||| || | || || ||| Sbjct 18051 AGCTTTAGCCACTTGTGAGAACGATTAGCAGGCTCGTAG 18013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303286469143640