Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3527 228 1e-54 seq185 188 9e-43 >seq3527 Length=112193 Score = 228 bits (252), Expect = 1e-54 Identities = 423/613 (69%), Gaps = 21/613 (3%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | ||| || || || ||| | ||| || || | |||||||| ||||| || | Sbjct 70789 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 70848 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | | || || ||||| || ||||| || || |||||||| || || ||| || || ||| Sbjct 70849 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCA 70907 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-------AC- 32823 || |||||||| |||||||| | ||||| || | || | || | || || Sbjct 70908 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 70967 Query 32824 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 32883 ||| | | || |||||| | ||||||| ||| ||||| || ||||| || || | Sbjct 70968 CGGGGGTCACA-----CCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCG 71022 Query 32884 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 32943 | || |||||| | ||||| | ||| || | || |||| |||||||||||| | Sbjct 71023 TATCAATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAA 71082 Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003 || ||| | ||||| ||||| || || || || |||||||| ||||| ||||| | Sbjct 71083 GCAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGC 71142 Query 33004 TAGCCTC-GGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTA 33060 ||| || |||| | || ||||| | | ||| |||| || | ||| |||||||| | Sbjct 71143 GAGCTTCAGGTACT-TGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAA 71199 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 | || ||||||||||||||||| || | ||||| || ||||||| ||| | | Sbjct 71200 TGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCG 71259 Query 33121 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 33180 | ||| | |||||||| |||| ||| | | || | ||||| ||||||| || | Sbjct 71260 TAAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACG 71319 Query 33181 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 33240 | ||||| || || || ||||| | ||| | ||| | | ||||| ||||||| |||| Sbjct 71320 AAGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAA 71379 Query 33241 ATCTATTTGGATT 33253 | | ||| || || Sbjct 71380 AACGATTCGGGTT 71392 >seq185 Length=10224 Score = 188 bits (208), Expect = 9e-43 Identities = 791/1235 (64%), Gaps = 18/1235 (1%) Strand=Plus/Minus Query 62489 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGA 62548 ||||| ||||| || || || ||||| || || || | || | | ||| || || | | Sbjct 2818 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2759 Query 62549 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62608 || || | |||||| || || || || | || ||||||||||| || | ||| | || Sbjct 2758 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2699 Query 62609 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62668 | | | || || || ||| |||| || || || || || | || |||| || || Sbjct 2698 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2639 Query 62669 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62728 || || | | | || || |||||| | ||| || | || || || || Sbjct 2638 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2579 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 |||||| | || || ||||| |||| || || ||||| ||||||| | | Sbjct 2578 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2519 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | ||| | |||| |||| ||| | ||||| | ||| || || | ||| || || Sbjct 2518 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2459 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 || ||| ||| || |||||| | || || ||||| || || |||||||| Sbjct 2458 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2399 Query 62909 GATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 62966 | |||| ||| ||| ||| | | || | || || ||| | || | | | | Sbjct 2398 GCATCTAAAAT-GCTGAACCATAGCTGCT-GCGCATTAATTGTC--TTGCGAGCGCGTCC 2343 Query 62967 CTC--TTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAGTC 63023 ||| ||||||| | ||| || ||| ||||||||||||||||| | || || Sbjct 2342 CTCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAG 2284 Query 63024 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63083 ||||| ||| | |||||| | || ||||| || | | | | ||| |||||||||| Sbjct 2283 CAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAA 2224 Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 | |||||||||||||| ||||| |||| || | | || || || || || Sbjct 2223 ACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCG- 2165 Query 63144 TATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63200 | |||||| || || || ||| | | | || | ||||||||| |||||||||| Sbjct 2164 --TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATA 2107 Query 63201 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63260 | || | ||| |||||| ||| || || || | ||||| || |||| ||| Sbjct 2106 TAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAA 2047 Query 63261 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTC 63320 | || | ||||| ||||| || || || || | |||||| || || |||||||| Sbjct 2046 ACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTGT 1987 Query 63321 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380 | |||| || || || || | || || || || ||| ||| || || | | Sbjct 1986 TAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCACG 1927 Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440 | ||| | || || || ||||| || || || || ||||||| ||| |||| || Sbjct 1926 CACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAA 1867 Query 63441 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAG 63500 |||| |||| |||| | ||| |||||| |||||||| || || || | || |||| Sbjct 1866 AACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGAG 1807 Query 63501 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560 |||| | || | ||| | | | ||||||||| | ||| | | |||| | | Sbjct 1806 TAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTCTTGT 1747 Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620 | || |||| || || ||||| | | || || |||| || |||| ||| | ||| Sbjct 1746 GGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGA-CTTTTCCATTA 1688 Query 63621 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 || || || ||| || | ||||| || || ||||||| || |||||| Sbjct 1687 ACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAAGTCC 1628 Query 63680 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 || |||| ||| || | ||||| || | ||| || Sbjct 1627 CGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTT 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633600159992000