Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3527 205 1e-47 >seq3527 Length=112193 Score = 205 bits (226), Expect = 1e-47 Identities = 418/612 (68%), Gaps = 12/612 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 |||||| | || |||||||| || || | |||||| || || || | ||| || Sbjct 70787 GTACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGA 70846 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 ||| | | ||| || | ||| || ||||||||||||||||| || || ||| || | | Sbjct 70847 GAAGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGC 70905 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 |||| || || || ||||| || | ||||| |||| | |||||| || | || Sbjct 70906 CAGAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATG--- 70962 Query 93261 AATTACTGCTGAT---CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 | || | | ||| || | ||||||| |||||| ||||| | ||| || | | Sbjct 70963 ACACACGGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCG 71022 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTA-TGTATGTATCGATT 93376 | || ||||| | || | |||| ||| | | || || || | |||||||| || Sbjct 71023 TATCAATAGCACGCAGGAGATGATCTTTCTCTACAGCAT-TCTTAATATATGTATCAATA 71081 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | ||| ||||| | || || || | |||||| || |||||||| || ||||| || || Sbjct 71082 AGCAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAG 71141 Query 93437 CTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | |||||| | | |||||||| ||| ||| | || ||||||| ||||| || || Sbjct 71142 CGAGCTTCAGGTACTTGCACTTCATTGCTAAAGT-TCATGGCGAGATTCTCATTCACAAT 71200 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||||| ||||||||||| || | | |||||| |||||||| |||| || | Sbjct 71201 GCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGT 71260 Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 ||| | | |||||| ||||| | | |||| |||||| | ||||| ||||| Sbjct 71261 AAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGA 71320 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || || ||||| |||||||| | ||| | ||| | | ||||| ||||| | ||||| Sbjct 71321 AGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAA 71380 Query 93676 ACGATTAGGGTT 93687 |||||| ||||| Sbjct 71381 ACGATTCGGGTT 71392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556832817744800