Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3839 134 3e-26 seq3868 102 2e-16 seq5 86.0 1e-11 >seq3839 Length=24414 Score = 134 bits (148), Expect = 3e-26 Identities = 432/662 (65%), Gaps = 24/662 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| || ||||| |||| ||| ||| || || |||||| ||||||||||| Sbjct 20293 CGCCACTGAATATACTGATTGGCTGTCTCGTCGAGATGCGACTCAATGTGGTGGAAAGCG 20352 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| |||||||||||||| || | ||||| Sbjct 20353 TGCTGAGCCACGTAGGCAAAACGCATGGAAGGATGCTTCCACACCTGTCCACTCGTCGGC 20412 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | ||| || ||||| | || || ||||| ||||| |||| Sbjct 20413 TCAACCTCACCAGTCAGCATCTTAATCAGCGTCGATTTACCGGCACCGTTGGGTCCAAGT 20472 Query 225161 ACGCCAATCCGGGATGACATTGC-AAC--CTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217 || |||| || |||| || || | |||| | |||| | | || ||| Sbjct 20473 ACAGCAATACGACTAGACAGAGCGCACGTCACCGAGATGTTGTTGATCGACGGCTTGGGG 20532 Query 225218 ---CCAG---TTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 |||| ||||| | || ||| | ||| ||||||| ||||| Sbjct 20533 GTTCCAGGATACTGGTACG---AG--CACTTC-GTCAGACGAATGATGGGCTTACCCTTG 20586 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC---C 225328 | ||| | | ||||| || ||||| |||||| ||| |||| ||| | Sbjct 20587 TTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGTAAACT---TCACATTGTCCGAC 20643 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 | ||| |||||||| | ||||| || || |||| ||| || || || || Sbjct 20644 TCCAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGCTCCACAAAACGGGAAAGATTGCCC 20703 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || || | |||||| || ||||||| |||| ||| | ||| || | |||| Sbjct 20704 TTGTAGATCTTCAGCTTGCGG---GTCTCGTAGTGAATAATGTTTGTGCAGACCGTGTCA 20760 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||||||||||||||| ||||| || || |||| || || ||||| ||| | |||| Sbjct 20761 AGGAAGCCAGAGTCGTGCGACACCATAATCGACGTTACATTTGTCAGACCCGTCAGGTAG 20820 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | ||||| || ||||| ||||||||| ||||| || || || || || | || | Sbjct 20821 TTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGGTTCGTCGGCTCATCAAGCAACAAG 20880 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || | || ||||| || | || || ||||| ||||| || || || Sbjct 20881 ATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCCAATTTCATCTTCCAACCACCAGAA 20940 Query 225629 AG 225630 || Sbjct 20941 AG 20942 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGA 224496 |||||| || ||||| ||| | || ||||| ||| ||| || || ||| || | Sbjct 19737 GAATTCGTTGTGGTGAGTAATCATAACCACACCACCGTTGAACTCCTTAATGGCCGAAGC 19796 Query 224497 AAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTG 224556 ||| || |||||||| || ||||||||| ||||||| |||||||| || | | | ||| Sbjct 19797 AAGAGCACCAAGCGAGTCACGGTCAAGGTAGTTCGTGGGCTCATCAAGCACAAGGATGTG 19856 Query 224557 GGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCC 224616 ||| | |||||| ||||| | | ||| | |||||||||||||| || || | || Sbjct 19857 CGGGTTCAGCCACATAGCTGCGGCCAGCACAACTTTCACCTTCTGACCACCGGACAAACC 19916 Query 224617 GCGGATCCGCGAGTGAGT 224634 ||| || || ||||| || Sbjct 19917 GCGCATACGTGAGTGGGT 19934 Score = 89.7 bits (98), Expect = 9e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 |||||||||||||||||||| || | ||| || || | || || ||| || ||| Sbjct 21127 GGGAAGCCCTCCAGCTGGCCGTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCG 21186 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 || ||||| || |||||| | | || ||||| | | || || | ||||| Sbjct 21187 TTAGGACCACACAGACCGTAACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAAC 21246 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 || ||| | |||||||||||||| ||||||||||||| ||| ||||| Sbjct 21247 AGAATCATACCACCATAGGCAAGCGAGAACTCGCAATTGCAAAGGTC 21293 >seq3868 Length=24320 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || || || || || || ||||| | |||||||| | |||||| || || || || Sbjct 11102 TTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 11043 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||| ||||| |||||||| ||||||||||| || || || |||||| || Sbjct 11042 AGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10983 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| ||| | | || || ||||| || ||||| || || || | ||||| || || Sbjct 10982 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAAAG 10923 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 10922 ATCTGCATGAT 10912 >seq5 Length=21317 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| || |||||| | || || |||| || ||||| ||||| Sbjct 17316 CCTTCCTTGTCCTGAATTTTCTGCTTGACAGTGTCAATACTGTCCGCCGATTCCACTTCG 17257 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || ||||| ||||||||||| || ||||||||| Sbjct 17256 AGCGTAATGGTCTTGCCCGTAAGGGTCTTGACAAAAATCTGCATT 17212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921576088474400