Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3786 113 4e-20 >seq3786 Length=9249 Score = 113 bits (124), Expect = 4e-20 Identities = 300/454 (66%), Gaps = 6/454 (1%) Strand=Plus/Plus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTA 20193 ||| || ||||| || || ||||||| ||| | || |||||||||| || | || Sbjct 2548 CGGGAACGGACGCGGTGTACGCGTCAACTGTTGTCGAAGTGGCTCTACGTGATTCAAATA 2607 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 ||| || || || || | || || ||||| || ||| | || || || || || Sbjct 2608 GATATGCGCGTCACCAATGACATGGATGAACTCGCCAGGTTTCAGTCCTACCACTTGCGC 2667 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 | || | |||| | | |||||||||||| ||||| || || || | |||||||| Sbjct 2668 GACCAAACGCGTTAGCAACGCATAGCTGGCAATATTAAATGGCACACCTAGTCCCATGTC 2727 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 |||| | ||| |||| ||| || || || || || || || || ||||| ||||| || Sbjct 2728 GGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCATCCGCCACGTAAAACTGACAAAA 2787 Query 20374 CAAGTGACAGGGCGGAAGCGCCA--TCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 || ||| || || || | ||||| ||| | | || ||||| ||||| || ||| Sbjct 2788 CATGTGGCACGGAGGTAACGCCATTTCATTTAGA--TCAGCCGGATTCCAAGCTGACAGC 2845 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAA-TTGGTC 20490 | |||| | || || || | | || | || | || ||| ||||| Sbjct 2846 ACAATTCGGCGGTCACTGGGGTTCGTACGGAGCTTATGGATAACAT-CGGCAAGCTGGTC 2904 Query 20491 AAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCA 20550 | || |||||| ||||||| || | | |||| |||| || ||||| || | ||| Sbjct 2905 CACGCCTTGGCCTCTATAGTCGGCGTGCATGTCCGTGTACTTGGCACCAAAATGACGCCA 2964 Query 20551 CTGGAAACCGTAAACAGGTCCCAAATCCCCCTCC 20584 || |||||||| || ||||| | ||| ||| || Sbjct 2965 TTGAAAACCGTATACCGGTCCAAGATCTCCCACC 2998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441350621016800