Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3839 138 2e-27 seq3527 91.5 3e-13 >seq3839 Length=24414 Score = 138 bits (152), Expect = 2e-27 Identities = 663/1037 (64%), Gaps = 33/1037 (3%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| || |||||||| |||| |||| ||| || Sbjct 20268 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGAATATACTGATTGGCTGTCTCGTCGAG 20327 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| |||||||| |||| |||||| ||||| Sbjct 20328 ATGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCAAAACGCATGGAAGGATG 20387 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | || | | || || |||| |||||| || || Sbjct 20388 CTTCCACACCTGTCCACTCGTCGGCTCAACCTCACCAGTCAGCATCTTAATCAGCGTCGA 20447 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCA-- 333551 ||| || ||||| || || | ||| |||| | || | | || | | || Sbjct 20448 TTTACCGGCACCGTTGGGTCCAAGTACAGCAATAC--GACTAGACAGAGCGCACGTCACC 20505 Query 333552 TTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 333610 | ||||| | | || || || ||||||| | | | ||| ||| || Sbjct 20506 GAGATGTTGTTGATCGACGGCTTGGGGGTTCCAGGATACTGGTA-CGAGCACTTCGTCAG 20564 Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC-- 333668 ||||||| |||| ||||| | | ||||| || ||||| |||||| Sbjct 20565 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGT 20624 Query 333669 ---TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTC 333725 | ||| | ||| || ||| || ||||||| | | || || || | Sbjct 20625 AAACTTCACATTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGC 20679 Query 333726 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 333785 | ||| || ||| ||||| |||||||| |||||||||| || | ||||| || Sbjct 20680 TCCACAAAACGGGAAAGATTGCCCTTGTAGATCTTCAGCTTGCGG---GTCTCGTAGTGA 20736 Query 333786 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 333845 ||||| ||||| || | ||| ||||| || |||||||| ||||| || | ||| Sbjct 20737 ATAATGTTTGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATAATCGACGTT 20796 Query 333846 ACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGG 333905 || | | || ||||||| | ||||||| ||||| || | |||| Sbjct 20797 ACATTTGTCAGACCCGTCAGGTAGTTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGG 20856 Query 333906 TTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 333965 || |||||||| ||||| | | | | ||| ||| | ||||| ||||| || || | Sbjct 20857 TTCGTCGGCTCATCAAGCAACAAGATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCC 20916 Query 333966 AGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA-ATATC 334024 | |||||| ||||| || || |||||||| || || ||| ||| | Sbjct 20917 AATTTCATCTTCCAACCACCAGAAAGAGTACCAACGCCCTGAGCTTGCATGTCAGGGGTG 20976 Query 334025 AAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTTA 334083 ||| ||| |||| | ||||| ||| || | || | | |||| ||| | Sbjct 20977 AAACCCACACCG--GCAAGAGTGTCCTCGACCTCCTTGCG---CGGAGTGTT---CTTCA 21028 Query 334084 CTTGTTCAT-CATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGA 334142 | |||| || | | ||| ||||| | | | || | || || || | | || Sbjct 21029 GATCCTCATCCACTAG-AATAAAGTCCACCACGGACAGCTCAGCCTCAGAAGCCTGCAGG 21087 Query 334143 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAGCTGACC 334201 | ||| ||||| | |||| |||| | | ||| | ||||| || || ||||| || Sbjct 21088 TTGTGCTCCACAAACACAGTCTTCAGCTCGT-CGCGGCTAGGGAAGCCCTCCAGCTGGCC 21146 Query 334202 GTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 334261 ||| ||| |||||||||| || || ||||| ||||| || |||||||||||||| Sbjct 21147 GTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCGTTAGGACCACACAGACCGTA 21206 Query 334262 GCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGC 334321 |||| |||||||| || | || | |||||||| ||||| | |||||||| || Sbjct 21207 ACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAACAGAATCATACCACCATAGGC 21266 Query 334322 CAGAGAAAATTCACAAT 334338 || || || || |||| Sbjct 21267 AAGCGAGAACTCGCAAT 21283 >seq3527 Length=112193 Score = 91.5 bits (100), Expect = 3e-13 Identities = 286/436 (66%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| ||| | || || || |||||| | ||||||||||| ||| ||| Sbjct 70927 GTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAAGAAACGTGGT 70868 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 |||||||||| || | | || |||||| | || ||||| || || || | ||| Sbjct 70867 CTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGGTATGCACACG 70808 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTCAA 243497 | || | | || ||||| || || || ||||| | ||| ||| || || | Sbjct 70807 GACTTTGCTTGTCTCATGTACTCGAAACTGGTTAACAAATTGCCAG-CGAGTCGTGTGCA 70749 Query 243498 ACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATG 243557 | || || || || || || || | || || | | ||| | |||| || Sbjct 70748 CGAGATTATTCGTGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCGCTTCC-TG 70690 Query 243558 CCG-GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACC 243616 || ||| |||||||||||||| | ||||||| | |||||||| || ||||| || |||| Sbjct 70689 TCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTGACC 70630 Query 243617 GCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTA 243676 | | | | | || ||| || || | || | ||||||| || || | || | Sbjct 70629 GTCTGCTATACTCACTGGGTGTTGCCAAGATTTATCATGCCAAGAATCCATTCGACTGGA 70570 Query 243677 TGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTAT- 243735 |||| | || ||||| ||||| || || ||||| ||||| || ||||| | || ||| Sbjct 70569 TGGATATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCGAGTATT 70510 Query 243736 -CAACGCCCTGGTGTG 243750 ||| | |||||||| Sbjct 70509 CCAAGG--CTGGTGTG 70496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102823194787000