Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq185 154 1e-32 >seq185 Length=10224 Score = 154 bits (170), Expect = 1e-32 Identities = 432/655 (66%), Gaps = 6/655 (1%) Strand=Plus/Plus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || |||| |||| | ||| | |||||| ||| || |||| || || || || || Sbjct 1899 GGTATTTATGACACATTGAAGCAATGTGCGTGCATTTCCAAATGGGCTGGTGGGATTGGC 1958 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 || ||| | ||| || |||| |||| ||| || || || || ||||| |||| Sbjct 1959 ATTAGTATGCACAACATACGAGCCACTAACAGCTATATTCGTGGCACTAATGGTTCCTCT 2018 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 ||||| || | || ||| | ||||| || ||| || |||| || ||||||||||| ||| Sbjct 2019 AACGGGATCATTCCCATGTTACGGGTGTTTAACGACACGGCCCGATACGTGGACCAAGGT 2078 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || || | | || || || || || | || | ||||| ||||| || |||||| Sbjct 2079 GGAGGCAAACGCAAAGGATCCTTTGCTATATACTTGGAGCCGTGGCATGCCGACGTGTTT 2138 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | || | |||||||| || |||||||| || || || | | || | ||| | ||| Sbjct 2139 GAGTTTCTAGACCTGCGTAAAAACCACGGTAATGAATTGCACCGAGCGCGTGACTTATTC 2198 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 |||||||| ||| | || || || ||||||||||| || || || | |||||| Sbjct 2199 TACGCTCTATGGATTCCTGATCTGTTTATGAAACGGGTGGAAGCTAATGGCAAGTGGAGT 2258 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGAC 94398 | || ||||| || ||| ||| | || | ||| || ||| || || |||| Sbjct 2259 TTATTCTGTCCGAACGAAGCTCCTGCTCTCTACGAGTGCTGGGGA-GACGAGTTCGAGAC 2317 Query 94399 -TTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCT 94457 | |||| |||||| | |||| || | ||| || |||| | |||| Sbjct 2318 GCTTTATGAAAAGTACGAAAAGGAGGGACGCGCTCGCAAGACAATTAATGCGCAGCAGCT 2377 Query 94458 GTGGGATCAG-ATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGG 94516 | || |||| || | || | ||| | |||||||| ||| | || | || |||| Sbjct 2378 AT-GGTTCAGCATTTTAGATGCGCAGATTGAGACGGGCGTGCCATTTATGCTCTTTAAGG 2436 Query 94517 ACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCG-AATCTG 94575 || | | |||| ||||||||||||||| | || || |||| || | | || || Sbjct 2437 ACGCAGCCAACCGTAAGTCCAACCAGCAGAATCTTGGCACGATC-CGATCCAGTAACTTG 2495 Query 94576 TGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGG 94630 ||| ||| | | |||||||| || ||||| ||| | || ||||| ||| ||| Sbjct 2496 TGCTGTGAGGTAATGGAGTATACGTCGCCGGATGAGGTGGCCGTGTGCAACTTGG 2550 Score = 116 bits (128), Expect = 4e-21 Identities = 373/582 (64%), Gaps = 11/582 (2%) Strand=Plus/Plus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCC---CTCGGGTCTGTACGACTGGG 95050 |||| || || ||||||||| | |||||||| | || ||| ||||| | |||||| Sbjct 2896 AGGGTATCTTCCAGTTCGACATGTGGGGTGTCACCCCGTCCTCTGGTCTTTGGGACTGGA 2955 Query 95051 AAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 || | | | || || || ||||| | ||| | |||| ||||| || | Sbjct 2956 CCGCCTTGAAGGAGAACGTGATTAAGCACGGCATCCGCAACTCTTTGCTAGTGGCTCCTA 3015 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||| || || || || || ||||||||||| ||||||||||| |||| || | ||| | Sbjct 3016 TGCCTACTGCTTCGACTGCTCAGATCCTTGGTAACAACGAGTCCATCGAGCCGTACACGT 3075 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 | ||| |||||||| | || ||||| || || || ||| | || | |||||| |||| Sbjct 3076 CGAACATGTACAACCGACGTGTGCTTGCTGGTGAGTTCACGATCGTGAACAAGTACCTGA 3135 Query 95231 TACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCG 95290 | || |||| ||||| | | ||| | ||||| ||||| | || || Sbjct 3136 TGAAAGAGCTGATCGATCTGGATATCTGGACGCCCGAGGTCCGTAACCAGATACTGAACG 3195 Query 95291 CCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGA 95350 | || || || || || | | || ||||| | |||| | | ||||| | Sbjct 3196 ACCGTGGTTCTGTGCAAAAGGTGAAGACCATTCCGGACCATGTCAAAGAGAAGTACAAAA 3255 Query 95351 CCGTGTGGGAGATCCCGCAG----CGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCC 95406 | |||||||| ||| |||| || ||| || || | |||| | ||| || | Sbjct 3256 CAGTGTGGGAAATCAAGCAGAAATCG-GTGTTA---GATCTGTCGGCTGACCGTGGTGCT 3311 Query 95407 TTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATA 95466 | ||| |||||||| || ||||| || | | | ||| | Sbjct 3312 TACATTTGCCAGAGTCAGTCGCTTAACATTCACATCGCCGACCCGACGATCAGTAAACTC 3371 Query 95467 ACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGA 95526 || |||||| || |||| |||| |||||| || ||||| ||||||||||| |||| Sbjct 3372 ACCTCCATGCACTTTTACGCTTGGAAAAAGGGGCTTAAGACGGGTATGTATTACATGCGC 3431 Query 95527 ACCAGGCCAAAGGCGGACTCCATACAGTTCGCCCTAGAAAAG 95568 | ||||| || ||| |||| |||||| || | || ||| Sbjct 3432 GGGCGCCCAAAAGCTGACGCCATCCAGTTCACCGTGGACAAG 3473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494698340159200