Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq185 116 6e-21 >seq185 Length=10224 Score = 116 bits (128), Expect = 6e-21 Identities = 391/603 (65%), Gaps = 17/603 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| |||||||| ||||||| | || | | | || || ||||| || Sbjct 3473 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTTGGGCGCCCGCGCATGTAATACATACC 3414 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||| | ||| |||| | ||||||||| | ||||| || | | || Sbjct 3413 CGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGGTGAGTTTACTGATCGTCGG 3354 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 |||||| ||||||||||| || ||||| || ||| ||| ||| | || || || | Sbjct 3353 GTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAATGTAAGCACCACGGTCAGCCGA 3294 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 || || | | | |||||| || |||||||| || ||| || ||| || || Sbjct 3293 CAGATCTAACACCGATTTCTGCTTGATTTCCCACACTGTTTTGTACTTCTCTTTGACATG 3234 Query 204079 TTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC---ATC 204133 | || | |||| ||| | || | || || |||| ||||| || | Sbjct 3233 GTCCGGAATGGTCTT--CACCTTTTGCACAGAACCACGGTCG---TTCAGTATCTGGTTA 3179 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 | ||| | ||| || ||| ||||||||| || ||||| ||| | | Sbjct 3178 CGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTCTTTCATCAGGTACTTGTTCACG 3119 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 ||| || || || | ||||| | |||| || ||| ||| ||| | || |||| Sbjct 3118 ATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGACGTGTACGGCTCGATG 3059 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | ||||||||| || | |||||||| || || || ||||| ||||||| |||| Sbjct 3058 GACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCACTAGCAAA 2999 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC-----GTGCA 204368 |||||||| | |||| || || | ||||| | ||||||||| | || Sbjct 2998 GAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAGTCCCAAAGACCA 2939 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 | || ||| | || ||||||||||||||||| ||||| || | ||| | ||| || Sbjct 2938 GAGGACGGGG--TGACACCCCACATGTCGAACTGGAAGATACCCTTGCTGGCCGGGGAGC 2881 Query 204429 CCT 204431 ||| Sbjct 2880 CCT 2878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795115243451200