Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10]
4,020 sequences; 24,880,192 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3527 150 2e-31
>seq3527
Length=112193
Score = 150 bits (166), Expect = 2e-31
Identities = 398/599 (66%), Gaps = 8/599 (1%)
Strand=Plus/Plus
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
|||| | ||||||||||| |||| || || || | ||| || ||||| ||
Sbjct 70789 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 70848
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| | | || ||||| || || ||||| ||||||||||| || | | ||| ||| |
Sbjct 70849 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAG 70908
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
| ||||| | ||| || || | || || |||| || || || || ||| | |
Sbjct 70909 AGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACAC 70968
Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126
| | | ||| || ||||| | ||| || | ||||| || || ||||| || |
Sbjct 70969 GGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAA 71028
Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186
| || || | | | ||||||| | | | || || || || || |
Sbjct 71029 TAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGTG 71088
Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246
|||| | |||||||| | ||||| || || |||||||| ||||||||||| || || |
Sbjct 71089 AATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTT 71148
Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCCGTC 133304
| || |||||||| | || ||| | || | | ||||| || || || ||||| ||
Sbjct 71149 CAGGTACTTGCACTTCATT-GCTAAA-GTTCATGGCGAGATTCTCATTCACAATGCCATC 71206
Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364
||||| || |||||||| ||||| ||||| || ||||| || || ||||| | ||| |
Sbjct 71207 ACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGT-AAGTG 71265
Query 133365 CTC-CCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422
| ||| || | | | | || || | ||| | ||| ||| | ||||| ||||| |||
Sbjct 71266 TTTTCCAATC-CTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCC 71324
Query 133423 TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481
|||||||| |||||||| ||||| ||| | || || ||||||| |||||| ||
Sbjct 71325 TCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAACG 71383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500147666316800
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |