Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq378 159 1e-33 seq3361 131 7e-25 seq3540 111 6e-19 seq759 87.8 7e-12 >seq378 Length=29730 Score = 159 bits (176), Expect = 1e-33 Identities = 338/502 (67%), Gaps = 7/502 (1%) Strand=Plus/Plus Query 451103 GATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAA 451162 |||| || ||| | ||||| |||| || |||| | | || ||| || ||||| Sbjct 5850 GATGTCAAGCGTCTGATTGGTCGTAAATACAATGACAAGTCGGTCCAATCGGACAAAAAG 5909 Query 451163 TTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAA 451222 || || ||||||| | | ||| || | ||||| || | ||||||||| | | || Sbjct 5910 TTGTTGCCTTATGAACTCATTAATAAAGATGGAAAACCTTTTATTCAAGTGACTGTCAAG 5969 Query 451223 GGTGA--AACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGA 451280 ||||| ||| || ||||||||||||||| | || | ||||| | || || |||| Sbjct 5970 GGTGAGAAACGTCAA--TTTGCTCCTGAAGAAGTCTCTGCCATGGTCTTGACAAAGATGA 6027 Query 451281 AAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCG 451340 | | | | ||| ||| |||||| | ||| |||||| || | || || || | Sbjct 6028 AGCAGATTTCGGAAGGATACATTGGTCGTGAAGTGTTTGATGCTGTTGTGACAGTCCCTG 6087 Query 451341 CTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAA 451400 |||| || || || || ||||| ||||| || || ||||| || ||||||||| | | Sbjct 6088 CTTACTTTAACGACGCTCAACGTCAAGCTACAAAGGATGCTGGTACCATTGCTGGTCTGA 6147 Query 451401 ATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAAT 451460 |||| || || ||||||||||| ||||| |||||| | || ||||| | | || Sbjct 6148 CCGTTCAACGGATCATTAATGAACCGACAGCTGCTGCTATTGCCTATGGCATTGACAA-- 6205 Query 451461 CAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATA 451520 || | || ||| || ||| | | || |||||| | ||||||||||| |||| Sbjct 6206 -GAAGGCTCAAGGAGAGAAGAATGTGCTGGTCTTTGATCTAGGTGGAGGAACCTTTGATG 6264 Query 451521 CTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTC 451580 | | || | || || | ||| || |||||||| |||||| || || ||||| | Sbjct 6265 TGACGTTGCTGGCGATCGATGGTGGTGTGTTTGAAGTCTTGGCAACGAACGGGGATACGC 6324 Query 451581 ATCTAGGAGGTGAAGATATTGA 451602 || | || || ||||| |||| Sbjct 6325 ATTTGGGCGGAGAAGACTTTGA 6346 >seq3361 Length=54802 Score = 131 bits (144), Expect = 7e-25 Identities = 458/704 (65%), Gaps = 21/704 (3%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| ||||||||||| || || | || ||||| ||||| | || |||| | || Sbjct 19413 ATTGGTATTGATCTTGGTACTACGTACTCTTGTGTGGGTGTGTGGAAAGATGGTCAGGTG 19354 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 || || || || ||| | ||| || || || ||||||||||| || | || Sbjct 19353 GAGATCATTGCCAATAGTGAGGGAAACCGTACGACCCCTTCATGGGTTGCATTCAATGAA 19294 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCCAAAAACA 451094 ||| | || | || |||| ||||| |||| | | | ||||| | |||| Sbjct 19293 AGTGAACGTCTCATTGGTGAAGCAGCTAAGATTCAA--GCAGCTGGTAATGCTACGAACA 19236 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA-AAA 451153 | || | |||||| |||||| | ||||| || | | | |||||| | || ||| ||| Sbjct 19235 CGGTGTTTGATGCCAAACGTATCATTGGACGCAGCTTTAGTGATGA-AGTGGTCAAGAAA 19177 Query 451154 GAGAAAAAATTCTTTTC--TTATGATGTAGTAAATCAAAAAGGA-AAGCCCTATATTCAA 451210 || |||| |||| | ||| || || || | | || ||| | ||| | Sbjct 19176 GATGCAAAACACTTTCCATTTACCATCAAGGAAGGAGACGATGATAAGGTCCTGATTGAG 19117 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || | | || || |||| || | |||| |||||||||| || || || ||||| || Sbjct 19116 GTTGAGTTCAAGGGAGAAAAGAAGAGTTTTACTCCTGAAGAGATCTCGTCGATGGTGCT- 19058 Query 451271 ACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAAT 451329 |||| ||||| |||||||||||| | | ||||| | | | | || || | Sbjct 19057 ACTACGTATGAAGGAAACAGCAGAAGCTTTTCTTGGTCAGACCATCTCACAGGCTGTTGT 18998 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 |||||| || ||||||||||| || ||| || ||| | || |||||||| || || Sbjct 18997 TACTGTACCTGCTTATTTCAACGACCAACAGCGTCAATCTACCAAAGATGCTGGTTCGAT 18938 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||| | |||| || || ||||||||||| || || ||||| || || ||||| Sbjct 18937 TGCTGGTCTGGATGTCAAACGTATCATTAATGAACCGACGGCTGCTGCCCTTGCCTATGG 18878 Query 451450 ACTAGGAAAATCAA--AAGAAACAGAAGaaaa------aaaTATTTTAGTATTTGATTTT 451501 |||| | | || | || || | ||| ||| || | | ||||| || Sbjct 18877 TCTAG--ATACGAACGCTGGCACGGATGGAAAGGTGTGCAATGTTCTGATTTTTGACTTG 18820 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 ||||| || || |||| || | ||||| || ||| |||| | ||||| || ||| Sbjct 18819 GGTGGTGGTACCTTTGATGTATCAATCCTTTCGATCGAAAATGGTATCTTTGAGGTCAAG 18760 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || |||||| || || | || ||||| || |||| || Sbjct 18759 TCTACGGGTGGTGACACGCACTTGGGTGGTGAGGACTTTGACAA 18716 >seq3540 Length=47434 Score = 111 bits (122), Expect = 6e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || ||||| || || || ||||| || || || || || | || || || ||| Sbjct 19573 TCCATGGTCCTAACGAAGATGAAGGAGACGGCTGATGGATTCCTGGGCAAACCTGTAACT 19514 Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 | || || |||| || || |||||||| ||||| ||||||| ||||| ||||| ||| Sbjct 19513 CAAGCTGTGGTTACGGTACCGGCTTATTTTAATGACTCACAACGTCAAGCTACTAAGGAT 19454 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || | ||||||||| | | || ||||| || || |||||||||||||| ||||| Sbjct 19453 GCTGGTAAAATTGCTGGTCTGGACGTACTTCGGATCATCAATGAACCTACAGCTGCTGCC 19394 Query 451439 CTAGCATATGG 451449 || || ||||| Sbjct 19393 CTTGCCTATGG 19383 >seq759 Length=4314 Score = 87.8 bits (96), Expect = 7e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| ||||| || || || ||||||||||| | || || ||||| || || || | Sbjct 1676 ATGCAGTGATTACGGTACCGGCCTATTTCAATGACTCGCAGCGTCAAGCCACCAAGGACG 1617 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || |||||||| | ||||| || || ||||| || ||||| || || |||||| Sbjct 1616 CCGGTGCCATTGCTGGACTTAATGTGCTCCGTATTATCAACGAACCGACGGCTGCTGCTA 1557 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 1556 TTGCCTATGGTCT 1544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975616638154160