Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq185 147 3e-30 seq3527 129 7e-25 seq2469 104 3e-17 seq97 93.3 5e-14 >seq185 Length=10224 Score = 147 bits (162), Expect = 3e-30 Identities = 407/614 (66%), Gaps = 9/614 (1%) Strand=Plus/Plus Query 111627 ATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGAC 111686 ||||| || || | |||||||| | | ||||| | | | ||||||||| ||||| Sbjct 1725 ATGCGCGTTGCTTTAGGTATCCACAAGAACAATATTCAAGCGGCTTTGGAGACGTACGAG 1784 Query 111687 AAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACC 111745 |||||| | | || | || || | || || ||||| | || || ||||| || || Sbjct 1785 TTGATGTCTCAGAAGTTTTTTACTC-ATGCGACGCCAACGTTGTTTAATGCTGGAACTCC 1843 Query 111746 AAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCAT 111805 | |||||| ||||| ||||| | | || | |||| ||||| || | || || Sbjct 1844 TCGCCCCCAACTGTCCTCGTGTTTTTTACTAGCTATGCAGGATGATTCGATTGAAGGTAT 1903 Query 111806 TTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCA 111865 ||| | ||| | | ||||||| || || || ||||||||||| || || || Sbjct 1904 TTATGACACATTGAAGCAATGTGCGTGCATTTCCAAATGGGCTGGTGGGATTGGCATTAG 1963 Query 111866 CATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGG 111925 || || | | |||||| || |||| | || || |||||| || | || Sbjct 1964 TATGCACAACATACGAGCCACTAACAGCTATATTCGTGGCACTAATGGTTCCTCTAACGG 2023 Query 111926 TATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTG--GG 111983 || ||||| ||| | || || ||||||| ||| || || || || |||||| || || Sbjct 2024 GATCATTCCCATGTTACGGGTGTTTAACGACACGGCCCGATACGTGGACCAAGGTGGAGG 2083 Query 111984 C-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTT 112042 | ||||| ||||| | || | || | ||||| ||||| || || | | ||||| Sbjct 2084 CAAACGCAAAGGATCCTTTGCTATATACTTGGAGCCGTGGCATGCCGACGTGTTTGAGTT 2143 Query 112043 CCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCG 112101 || || ||||| ||||| ||| |||| || | | || || || | |||| || Sbjct 2144 TCTAGACCTGCGTAAAAACCACGGTAATGA-ATTGCACCGAGCGCGTGACTTATTCTACG 2202 Query 112102 CTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCT 112161 |||| |||||||| ||||| || ||||| | || || | | |||||| ||| | | | Sbjct 2203 CTCTATGGATTCCTGATCTGTTTATGAAACGGGTGGAAGCTAATGGCAAGTGGAGTTTAT 2262 Query 112162 TTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTC 112220 | ||||| || | || || | ||||| ||| ||| | ||| || ||||| || | || Sbjct 2263 TCTGTCCGAACGAAGCTCCTGCTCTCTACGAGTGCTG-GGGAGACGAGTTCGAGACGCTT 2321 Query 112221 TACACAAAGTACGA 112234 || ||||||||| Sbjct 2322 TATGAAAAGTACGA 2335 >seq3527 Length=112193 Score = 129 bits (142), Expect = 7e-25 Identities = 195/274 (71%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||||||| ||| || ||||| | || ||| | || || | || | |||||| Sbjct 71071 TATATTAAGAATGCTGTAGAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGT 71012 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT--TCCTTTG 102177 | | |||||||| ||||||| | ||||||| ||| | || | || || | | Sbjct 71011 GTCAAGAAGAAAGCCAATTGGGCACTCAAGTGGTGTGACCCCC-GT-GTGTCATCGTACG 70954 Query 102178 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 102237 | || || || || || ||||| | || || || || ||||||||||| ||||||||| Sbjct 70953 CGGAACGTCTATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCT 70894 Query 102238 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 102297 |||| | |||||||||||| || ||||| ||||| ||||| ||||||| |||||||| | Sbjct 70893 CTATCTTTTGGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAA 70834 Query 102298 TCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | |||||| || || | ||| || ||||| Sbjct 70833 TTAGTCGTGATGAAGGTATGCACACGGACTTTGC 70800 >seq2469 Length=34623 Score = 104 bits (114), Expect = 3e-17 Identities = 303/456 (66%), Gaps = 17/456 (4%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 || || ||||||||||| | || || | ||||| |||||| |||| ||||| | || Sbjct 20690 TCGAAACGACCTGGGCGCAAGATAGCCTTGTCAAGAATATCAGCGCGGTTCGTACCAGCA 20749 Query 15948 ATGACAACAATACCTGTTTCGTT---ATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || || | |||| ||| | || |||||||||||||| | | ||||||| Sbjct 20750 AGCACCACCACACCT---TCGCTCGAATTGAAACCATCCATCTCAACTAGCAACTGGTTA 20806 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--TGCTTTC-C 16060 | || | ||| || || ||||| || | | | | | || || | ||| | | Sbjct 20807 AGCGTGTTTTCGCGCTCGTCATT-GCCGCCCGAGAAGTTACCCTTGCTTCGTGCACGCGC 20865 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120 ||| ||||| || ||||| ||||| ||||| || || |||| | ||||| | | ||| Sbjct 20866 CACTGCATCGATTTCATCGATGAACACGATACACGGAGCATTTGCACGAGCCTCCTTAAA 20925 Query 16121 GAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 ||||| || ||||| || || ||||| || || |||||||| | || | | | Sbjct 20926 CAGATCACG--CACGCGTGACGGACCCACGCCTACGAACATCTCGATGAAATCCGACCCC 20983 Query 16179 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 ||| | ||| || ||| ||| |||||| || |||| || | || |||||| Sbjct 20984 GAAATGCTAAAGAATGGCACACTAGCTTCACCAGCTGTGGCCTTCGCCAACAGCGTCTTA 21043 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 16298 |||||||| ||| ||| | || || || || ||||||||||| ||| | | | Sbjct 21044 CCCGTACCAGGCGGACCAACAAGCAGCGCCCCCTTAGGAATCTTGGCACCAAGGTCCATG 21103 Query 16299 TATCTC-TCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | | | || |||||| ||| || ||||||| ||| Sbjct 21104 AAACGCTTCTGGTTGC-GAAGGAAGTCCACAAACTC 21138 >seq97 Length=26941 Score = 93.3 bits (102), Expect = 5e-14 Identities = 261/389 (67%), Gaps = 30/389 (8%) Strand=Plus/Plus Query 176701 TGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATC 176760 |||||| |||| ||||| | |||| | |||||||||||||| ||||||| ||| Sbjct 15041 TGGCCAAAAGTGATGAATGAGGTTGATCACCAGACCCTTGATGTGACTGCCGTCGTGATC 15100 Query 176761 GGCATCCGTCATGATCATGAGACGACCATACCG-AAGC---TCGGAAACATCTTGATAGT 176816 ||| | ||||||||| | ||||||||| |||| ||| | || | |||| Sbjct 15101 TTGATCTGCCATGATCATCAAGTGACCATACCTCAAGCCCTTCGTAGAC----TCGTAGT 15156 Query 176817 CCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA----CTCTTGGTTTG 176870 | || | | ||||| | |||||| || |||| ||| ||| | || Sbjct 15157 TTTCGCCGTACTTGAGACCAAGGATCTT---GACCACGTTTTGAATCTCCTCATTCTTCA 15213 Query 176871 A--TGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGA 176927 | | |||| |||||| || |||||||| || | || ||| || || | |||| Sbjct 15214 AAATTTGAG---TGTGACTT--GCTTCACGAACGTT-TAGCATCTTACCTCGCAATGGGA 15267 Query 176928 AGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAG 176987 | ||||| |||| ||| | ||||| |||| || || |||| || | ||||| || | Sbjct 15268 AAACACCATAGTAATCTCTGCCAACGACAGCAAGGCCACCAACAGCAACAGTTTTGGCGG 15327 Query 176988 AATCACCCTCTGTCACGATGAGTGTACA--CTTGCCAGATTGTGCCGTACCCGCCTTGTT 177045 |||| || ||||| | || || || || ||| | || || ||||| || | || Sbjct 15328 AATCGCCTTCTGTTAGAATCAGAGTGCAATCTTTGCT--TTTCGCTGTACCAGCGTGATT 15385 Query 177046 CGCATCATCCAATTTGGGAATACCAGTAA 177074 |||||||||| ||||||||||||||||| Sbjct 15386 GGCATCATCCAGTTTGGGAATACCAGTAA 15414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620711207694400