Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq185 178 2e-39 seq2469 132 6e-26 seq3527 120 4e-22 >seq185 Length=10224 Score = 178 bits (196), Expect = 2e-39 Identities = 1146/1824 (63%), Gaps = 38/1824 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 |||||||||||||| || || || ||||| ||||| | ||||| || | |||||| Sbjct 3424 TAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGGTGAGTTTA 3365 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||| | ||||||| ||| ||| | |||| Sbjct 3364 CTGATCGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAATGTAAGCACCA 3305 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || ||||||| || || | | | || || | |||||||| || || |||||| Sbjct 3304 CGGTCAGCCGACAGATCTAACACCGATTTCTGCTTGATTTCCCACACTGTTTTGTACTTC 3245 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | |||| || || |||||| | | ||||| | ||| |||| | |||| || Sbjct 3244 TCTTTGACATGGTCCGGAATGGTCTTCACCTTTTGCACAGAACCACGGTCGTTCAGTATC 3185 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 | | | ||| || ||||| | | | | | || || | | || | |||| Sbjct 3184 TGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTCTTTCATCAGGTACTTG 3125 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | || ||||||||||| |||||| ||| ||||| | |||||| || Sbjct 3124 TTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGACGTGTACGGC 3065 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| |||| ||||| || ||||| || ||||| ||||| || ||||| ||||||| Sbjct 3064 TCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCACT 3005 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 || | | ||| |||| || | | | | || ||| || ||| ||| || || Sbjct 3004 AGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAGTCCCAA 2945 Query 109894 CGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCA 109953 ||||| | || |||| |||||| || || | | ||||| || Sbjct 2944 AGACCAGAGGACGGGGTGACACC---CCACATGTCGAACTGGAAGATACCCTTGCTGGCC 2888 Query 109954 GGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT 110013 || || |||| || ||||||||| ||| | | ||| | ||| || | ||| Sbjct 2887 GGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGGATGTCTCC 2828 Query 110014 AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAG 110073 | | |||| ||| || ||||||||||||| |||| |||| || || | Sbjct 2827 ATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTT 2768 Query 110074 TCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAAT 110132 ||||| | | || || | |||| || |||| || |||||||||||||| | || | Sbjct 2767 TCGAACGCATAGTTCATGA-GAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCAC 2709 Query 110133 GGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGAT 110192 ||||| || |||||| || |||||| | | || ||||| ||||| ||| || Sbjct 2708 AGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAAT 2649 Query 110193 GACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA 110252 ||| || || || || || |||||| | |||| || || | ||| ||||| Sbjct 2648 AACCTTGTTAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAA 2589 Query 110253 CGTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAG 110311 | |||| ||| ||| | || || | ||| | |||||| | |||||||| | Sbjct 2588 -GACACCGTCCTCC------ACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGG 2536 Query 110312 AAGTCTCGTCTTTGTCGGTGTAT--TCCAAAATTTCCGTACACAAGTT---GGAACTCTT 110366 ||| || | || |||| |||| | || |||||||| ||| | | Sbjct 2535 CCACCTCATCC--GGCGACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGAT 2478 Query 110367 AATGACACCCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGT 110425 || ||||| |||| ||| || || || |||| ||| |||||| ||||||| Sbjct 2477 CGTG----CCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAA 2422 Query 110426 ATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGA 110485 |||| || || || |||| | | | |||| ||||| | || ||| Sbjct 2421 ATGGCACGCCCGTCTCAATCTGCGCATCTAAAATGCTGAACCATAGCT--GCTGCGCATT 2364 Query 110486 CAGTTGCGTT---AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCT 110542 | ||| || |||| | || |||| |||||||| || | ||| || || | Sbjct 2363 AA-TTGTCTTGCGAGCGCGTCCCTCCTTTTCGTACTTTTCATAAAGCGTCTCGAACTCGT 2305 Query 110543 GTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA 110601 ||| | ||| || | ||| | || | || |||||||| | ||| || ||| Sbjct 2304 CTCCCCAGCAC-TCGTAGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCA 2246 Query 110602 CCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGG 110661 | || |||| ||||| ||||| ||||||||||| | || |||| | |||||| Sbjct 2245 TTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGC 2186 Query 110662 CAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAG 110721 || | ||||| ||| ||||| || || || | ||| || | | || | Sbjct 2185 GCTCGGTGCAATTCATTACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCA 2126 Query 110722 TGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCCT-GGTTAACA 110778 ||||| || || | || | ||| | |||||| || || || | ||| ||| || Sbjct 2125 TGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACG 2066 Query 110779 TAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTT 110838 || || || ||| | || || |||| | ||| ||||| || || | || |||||| Sbjct 2065 TATCGGGCCGTGTCGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTA 2006 Query 110839 GTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCC 110898 || || | ||| | ||| |||| || |||| ||| ||| || ||||| ||||| Sbjct 2005 GTGCCACGAATATAGCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCA 1946 Query 110899 GCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCT 110958 ||||| || ||| ||||| | | | ||| |||||||||| ||||||||||| Sbjct 1945 GCCCATTTGGAAATGCACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCA 1886 Query 110959 GCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAG 111018 ||| | || | || ||| || || |||| || || ||||| ||||| ||||| || Sbjct 1885 TCCTGCATAGCTAGTAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAAC 1826 Query 111019 AGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGC 111077 | || || ||||||||| | || | || | || |||||| | ||| || || | || Sbjct 1825 AACGTTGGCGTCGCATGAGT-AAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGC 1767 Query 111078 GGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGT 111137 | | | || || ||| ||||| | ||||| ||||| | | | ||| || Sbjct 1766 CGCTTGAATATTGTTCTTGTGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCG 1707 Query 111138 TTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAA 111197 || | | ||||||| |||||| || || | ||||| || || |||| || || Sbjct 1706 CTCCACGACTTTTCCATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAA 1647 Query 111198 GTATCCAAAATCGAAATCACGATC 111221 || || | || || || || || Sbjct 1646 ATAGTCATACTCAAAGTCCCGGTC 1623 >seq2469 Length=34623 Score = 132 bits (146), Expect = 6e-26 Identities = 335/502 (67%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||||||||||||||| | | ||| | ||||||||||| | ||||| ||| | ||| Sbjct 20690 TCGAAACGACCTGGGCGCAAGATAGCCTTGTCAAGAATATCAGCGCGGTTCGTACCAGCA 20749 Query 11566 ATGACTACAATGCCAGTCTCATTG--TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGA 11623 | || || | || || | | | | |||||| ||||| || || | |||||| | Sbjct 20750 AGCACCACCACACCT-TCGC-TCGAATTGAAACCATCCATCTCAACTAGCAACTGGTTAA 20807 Query 11624 TCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC-----C 11678 ||| | ||| ||||| || ||| | | | | | || ||||| | | | Sbjct 20808 GCGTGTTTTCGCGCTCGTCATTGCCGCCCG-AGAAGTTACCCTT-GCTTCGTGCACGCGC 20865 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 || || || || ||||||||||| ||||||||||| || ||||| |||| | || Sbjct 20866 CACTGCATCGATTTCATCGATGAACACGATACACGGAGCATTTGCACGAGCCTCCTTAAA 20925 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 || ||||| || || || || || |||||||||||||| | ||| | | | || Sbjct 20926 CAGATCACGCACGCGTGACGGACCCACGCCTACGAACATCTCGATGAAATCCGACCCCGA 20985 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | || ||| || ||| ||| |||||||| |||| || | || |||||||| Sbjct 20986 AATGCTAAAGAATGGCACACTAGCTTCACCAGCTGTGGCCTTCGCCAACAGCGTCTTACC 21045 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 ||||||||| | |||| | || || || || || |||||||||||| | | | | Sbjct 21046 CGTACCAGGCGGACCAACAAGCAGCGCCCCCTTAGGAATCTTGGCACCAAGGTCCATGAA 21105 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGAT 11978 |||| | || ||||||||||||| |||| | |||| |||||| ||| | Sbjct 21106 ACGCTTCTGGTTGCGAAGGAAGTCCACAAACTCCATGATCTCCTTCTTGGCCTCGTCCAC 21165 Query 11979 ACCCTCAACATCGGTGAAACGA 12000 ||| | ||||| | |||||| Sbjct 21166 ACCGGCCACATC-CTTAAACGA 21186 >seq3527 Length=112193 Score = 120 bits (132), Expect = 4e-22 Identities = 327/499 (66%), Gaps = 5/499 (1%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 |||||||| ||| || ||||| || ||||| ||| |||||||| || || | |||| Sbjct 70818 CCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCAGACCACGTTTC 70877 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||||||||| | || || ||||| ||||| ||||| || || | || || Sbjct 70878 TTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTACCGAAGCAAAC 70937 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACTTGAGAGCCCAGTT 119689 || |||||||| || || | | | || || ||| |||||||||| ||||| || Sbjct 70938 GCCAATAGACGTTCCGCGTACGAT-GACACACGGGGGTCACACCACTTGAGTGCCCAATT 70996 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGC 119749 ||| || || | || |||| || | || || | || || | || || | Sbjct 70997 GGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGATCTTTCTCTAC 71056 Query 119750 ACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATT 119809 | ||| |||||||||| ||||||| || || ||| ||| |||| | || | Sbjct 71057 AGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGAATATTCTCGAT 71116 Query 119810 GTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATT 119869 ||| | | ||||| |||||||||| | | ||||||||| | ||| || Sbjct 71117 AGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTAAAGTT 71176 Query 119870 GTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTT 119929 || || ||| ||| ||||| ||||| | || || || || | | | ||| Sbjct 71177 CATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTT 71236 Query 119930 TATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGTC 119989 || || | ||||||| || | ||||||||||| || | | ||| | |||||| Sbjct 71237 AATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTC 71296 Query 119990 CACCTCTTCAGCTGTCCAG 120008 | |||||| ||||||||| Sbjct 71297 GAGCTCTTCGGCTGTCCAG 71315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588946403956000