Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3868 141 2e-28 seq185 89.7 1e-12 >seq3868 Length=24320 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || ||||||||||| || | ||| || | |||||||| |||||||| || || ||||| Sbjct 11102 TTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 11043 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || ||||| ||||| || ||||| ||||| ||||| || ||||| |||||||| || ||| Sbjct 11042 AGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10983 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| ||| || ||||| || | |||| ||||| ||||||||||| || || || Sbjct 10982 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAAAG 10923 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 10922 ATCTGCAT 10915 >seq185 Length=10224 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAAAAGCCCGGAGGTGATGACCTGA 160571 ||||| | ||| | ||||| ||| | || |||| |||| || | || |||| || Sbjct 2121 TGGCATGCCGACGTGTTTGAGTTTCTAGACCTGCGTAAAAACCACG--GTAATGAATTGC 2178 Query 160572 TGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGA 160631 |||| | || | |||||||| | |||| | | ||||| || ||||| | ||| Sbjct 2179 ACCGAGCGCGTGACTTATTCTACGCTCTATGGATTCCTGATCTGTTTATGAAACGGGTGG 2238 Query 160632 AAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTT 160691 ||| ||||| | ||||| | |||||||| || ||||| |||| || | || | Sbjct 2239 AAGCTAATGGCAAGTGGAGTTTATTCTGTCCGAACGAAGCTCCTGCTCTCTACGAGTGCT 2298 Query 160692 ATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGA 160738 || |||||||||||| |||||||||| |||||||| |||||| Sbjct 2299 GGGGAGACGAGTTCGAGACGCTTTATGAAAAGTACGAAAAGGAGGGA 2345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109424454763340