Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3786 132 4e-26 >seq3786 Length=9249 Score = 132 bits (146), Expect = 4e-26 Identities = 436/664 (66%), Gaps = 19/664 (3%) Strand=Plus/Plus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 || || || ||||||| || |||| || ||||| || | | |||| ||||| || Sbjct 2585 AGTGGCTCTACGTGATTCAAATAGATATGCGCGTCACCAATGACATGGATGAACTCGCCA 2644 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 |||| || || || || || | || ||| || | | |||||||| || ||| Sbjct 2645 GGTTTCAGTCCTACCACTTGCGCGACCAAACGCGTTAGCAACGCATAGCTGGCAATATTA 2704 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982 || || || || || |||||||| |||| | |||||| | ||| ||||| || || || Sbjct 2705 AATGGCACACCTAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCA 2764 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 || ||||||||||||||| | ||||||||||||| | ||||| | || Sbjct 2765 TCCGCCACGTAAAACTGACAAAACATGTGGCACGGAGGTAACGCCATTTCATTTAGATCA 2824 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30102 || ||||| || ||| | || || | ||| ||||| |||| | ||| | Sbjct 2825 GCCGGATTCCAAGCTGACAGCACAATTCGGCGGTC-ACTGGG--GTTCGTACGGAGCT-T 2880 Query 30103 ACGG----CGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30158 | || | | ||||| ||||| || || ||||| || ||||||||| Sbjct 2881 ATGGATAACATCGGCAAGCTGGTCCACGCCTTGGCCTCTATAGTCGGCGTGCATGTCCGT 2940 Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 ||||| || || ||||| | ||| || || ||||| |||||||| || |||||| | || Sbjct 2941 GTACTTGGCACCAAAATGACGCCATTGAAAACCGTATACCGGTCCAAGATCTCCCACCTC 3000 Query 30219 CCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | ||| | | ||||| || ||||||| | || | || || ||| |||||||||| Sbjct 3001 AC-GTGATTGCAGCCCTCTACTGTCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGG 3059 Query 30278 TTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30336 | ||||| | || ||| | | |||||| || || | ||||||||||| | Sbjct 3060 AAATATTCTTCTGCTGA-AGCGTGTGAGCATTTGTGTCACCACTAATGAACCACAGCAAC 3118 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA--GGGGAAACTGTC-CC 30393 || || | || | |||||| || |||| ||||| || | ||| | || || || Sbjct 3119 TCTTCGGCCACACCTCGCCAAAACACTTTCTTCGTCGTCAGCAACGGGAAGACATTCTCC 3178 Query 30394 TTGAGGCCGTACATGGC--CTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGT 30451 | || | || || | ||| | |||||||| ||||| || ||||| || | || Sbjct 3179 CTCAGAC--TAAATCTCATCTGCGCTCCAAACACAGACAACGTCCCGGTGCCTGTTCGGT 3236 Query 30452 CTCC 30455 |||| Sbjct 3237 CTCC 3240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408597580291460