Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq378 149 4e-30 seq3540 113 3e-19 seq3361 104 2e-16 seq3868 86.0 4e-11 >seq378 Length=29730 Score = 149 bits (164), Expect = 4e-30 Identities = 388/585 (66%), Gaps = 9/585 (2%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||||||||| || || || || ||| || |||| ||| | | || || Sbjct 5661 ATTGGTATTGACTTGGGTACAACGTACTCGTGCGTAGGCTTTTACAAGGACCAAAAGGTT 5720 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT-ACTGA 474450 || || ||||||||||| ||||||||| | | || || || || ||| ||| ||| Sbjct 5721 GAGATCATTGCCAATGATCAAGGTAATCGTATCACGCCTTCTTACGTTGCTTGGGACTCG 5780 Query 474451 AAC--TGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 ||| ||| | | | ||||| |||| ||| || |||||||| | |||||| | || Sbjct 5781 AACGATGAGCGTTTGATTGGTGATGGTGCAAAGAATCAAGCTACGATTAATCCGGAGAAG 5840 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || |||| || | ||||||||||||| | |||| | | |||||||| Sbjct 5841 ACGTTGTTCGATGTCAAGCGTCTGATTGGTCGTAAATACAATGACAAGTCGGTCCAATCG 5900 Query 474569 GATATGC-GTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 || | || ||| |||| | | | || ||| | ||| ||||| | ||| ||| Sbjct 5901 GACAAAAAGTTGTTG-CCTTATGAACTCATTAATAAAGATGGAAAACCTTTTATTCAAGT 5959 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687 | | ||||| | |||||| | || ||| || | ||| | ||||| || | Sbjct 5960 GACTGTCAAGGGTGAGAAACGTCAATTTGCTCCTGAAGAAGTCTCTGCCATGGTCTTGAC 6019 Query 474688 CAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 || ||||| || | || ||| |||| | ||||| |||||| || | || Sbjct 6020 AAAGATGAAGCAGATTTCGGAAGGATACATTGGTCGTGAAGTGTTTGATGCTGTTGTGAC 6079 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || || || || ||||| || ||||||||||||| || || ||||| || | ||||| Sbjct 6080 AGTCCCTGCTTACTTTAACGACGCTCAACGTCAAGCTACAAAGGATGCTGGTACCATTGC 6139 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 ||||| | ||| ||| || ||||||||||| ||||| || || |||| ||||| | Sbjct 6140 TGGTCTGACCGTTCAACGGATCATTAATGAACCGACAGCTGCTGCTATTGCCTATGGCAT 6199 Query 474868 TGATAAGAATTCTGA--CAAAGAAGTAAATGTTTTAATCTTTGAT 474910 ||| ||||| || | | ||||| ||||| | |||||||| Sbjct 6200 TGACAAGAAGGCTCAAGGAGAGAAG--AATGTGCTGGTCTTTGAT 6242 >seq3540 Length=47434 Score = 113 bits (124), Expect = 3e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 |||||| | || || |||| || || || ||||||||||| || ||||||||||| ||| Sbjct 19519 GTAACTCAAGCTGTGGTTACGGTACCGGCTTATTTTAATGACTCACAACGTCAAGCTACT 19460 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 || ||||| || | |||||| ||||| | || | || || || |||||||| ||||| Sbjct 19459 AAGGATGCTGGTAAAATTGCTGGTCTGGACGTACTTCGGATCATCAATGAACCTACAGCT 19400 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAG 474874 || || ||||| |||||| | || ||| Sbjct 19399 GCTGCCCTTGCCTATGGTATGGACAAG 19373 >seq3361 Length=54802 Score = 104 bits (114), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||||||| | || ||||| ||| |||||| | ||| ||| || ||||| | || Sbjct 19413 ATTGGTATTGATCTTGGTACTACGTACTCTTGTGTGGGTGTGTGGAAAGATGGTCAGGTG 19354 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || ||||||||| | || || | || || || |||| ||| | || | |||| Sbjct 19353 GAGATCATTGCCAATAGTGAGGGAAACCGTACGACCCCTTCATGGGTTGCATTCAATGAA 19294 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 | ||||| ||| ||||| || || ||||| |||||| || |||| || || || Sbjct 19293 AGTGAACGTCTCATTGGTGAAGCAGCTAAGATTCAAGCAGCTGGTAATGCTACGAACACG 19234 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGAT 474553 | |||||||| ||| | | ||||| || | ||| |||| Sbjct 19233 GTGTTTGATGCCAAACGTATCATTGGACGCAGCTTTAGTGAT 19192 Score = 93.3 bits (102), Expect = 3e-13 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || || ||||| || || || |||||| | || |||||||| || | Sbjct 18998 TTACTGTACCTGCTTATTTCAACGACCAACAGCGTCAATCTACCAAAGATGCTGGTTCGA 18939 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||||| |||| |||||| ||||||||||| || || || || ||||| |||| Sbjct 18938 TTGCTGGTCTGGATGTCAAACGTATCATTAATGAACCGACGGCTGCTGCCCTTGCCTATG 18879 Query 474864 GTCTTGATAAGAATTCTGACAAAGAAGTAAATGT 474897 |||| |||| ||| ||| || || | ||| || Sbjct 18878 GTCTAGATACGAACGCTGGCACGGATGGAAAGGT 18845 >seq3868 Length=24320 Score = 86.0 bits (94), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || |||||||| || ||||| ||||| |||||||| Sbjct 11070 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCTTCCTT 11011 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAAT 480706 ||| || || || || |||||| ||||| Sbjct 11010 GTCCTGGATTTTCTGCTTGACATTGTCAAT 10981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268006762694960