Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq383 138 3e-27 seq185 127 6e-24 seq3839 111 5e-19 seq3569 109 2e-18 seq97 84.2 6e-11 >seq383 Length=17096 Score = 138 bits (152), Expect = 3e-27 Identities = 202/279 (72%), Gaps = 14/279 (5%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||||||||||||||| || || |||||||| |||||||| | ||| ||||| Sbjct 2941 CGCCGCTGAATATAACCAGTCTCAGCAGTCTTTACAGCGGTATCAATCAAACCTTCACGA 2882 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| ||||| || | ||||| || ||| | ||| ||| | | || | | Sbjct 2881 CCACCCATAGCGTGGAAAAAGAACTCTTGTGG-CGTTAAACCCTTCAA-ATACGAATTTT 2824 Query 302711 CAACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | |||||||| || |||||| |||| || |||| |||| ||||| || | Sbjct 2823 CCACGAAACCTCGGCTCTCGGGACCTAAATCATC---CTTGCCGTAGTGCGGCAGCGTTC 2767 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 | | | || ||||| ||||||||||| ||||| |||||||| |||| |||| || Sbjct 2766 GATGGTTGAAACCATATGGAATACGCTTTCCTTCAACATTCTGCTGGCCCACACACGCAA 2707 Query 302828 TCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864 | ||||| ||||| || ||||| | |||||||| || Sbjct 2706 TGATCTGTGAAATGTTAATAAATGA--ACCCTTGGAACC 2670 >seq185 Length=10224 Score = 127 bits (140), Expect = 6e-24 Identities = 328/499 (66%), Gaps = 3/499 (1%) Strand=Plus/Minus Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGA 156083 ||||||| || |||||||| || || | ||||| ||| || || || || || Sbjct 2119 GGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGG 2060 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 || || | || || || | || ||| ||||| || || || || | ||||| || || Sbjct 2059 GCCGTGTCGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCA 2000 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 ||||||| || | || | || || ||| | ||||| ||||| | |||| Sbjct 1999 CGAATATAGCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCAT 1940 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || ||||| || |||| ||| | || | ||||||||||||| |||||||| | | Sbjct 1939 TTGGAAATGCACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGC 1880 Query 156264 ATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 || | ||||| | | ||||| | ||| || || || |||||||| || || | || Sbjct 1879 ATAGCTAGTAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTT 1820 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCA 156383 || || |||||| ||||| |||| | |||||| | ||||| |||||| | | | | Sbjct 1819 GGCGTCGCATGAGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGA 1760 Query 156384 AGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 | ||| | ||| |||| | || || | ||| | || || || ||||| || Sbjct 1759 ATATTGTTCTTGTGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACG 1700 Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA 156503 | ||||| || || | || ||| | || || ||||| || |||||||| ||| Sbjct 1699 ACTTTTCCATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCA 1640 Query 156504 AACAGAAAATCACGGTTGT 156522 || ||| || |||| || Sbjct 1639 TACTCAAAGTCCCGGTCGT 1621 >seq3839 Length=24414 Score = 111 bits (122), Expect = 5e-19 Identities = 133/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 353957 AGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGAT-AGCTC-TTAATTGCTGT 354014 ||||||| || |||| || |||| |||||| || | | | ||| ||||| || | Sbjct 19736 AGAATTCGTTGTGGTGAGTAATCATAACCACACCACC--GTTGAACTCCTTAATGGCCGA 19793 Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 || ||||||||||||||||||||||| ||| | || || || || ||||| | ||| | Sbjct 19794 AGCAAGAGCACCAAGCGAGTCACGGTCAAGGTAGTTCGTGGGCTCATCAAGCACAAGGAT 19853 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGA 354131 |||||| | || |||||| ||||| ||||| || || || |||||||| || || || Sbjct 19854 GTGCGGGTTCAGCCACATAGCTGCGGCCAGCACAACTTTCACCTTCTGACCACCGGA 19910 >seq3569 Length=50395 Score = 109 bits (120), Expect = 2e-18 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || | ||| ||| || ||||| || || | ||| || || || || |||| Sbjct 21866 GGCAATGATACCGCACACATCGCACACGTGCACACGGTACGCGTCCGAGTTAGCAAATAG 21807 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || || ||| || || ||||| || |||| ||||||||| ||||||||||| Sbjct 21806 GCGGTCCATGAGAAAGTTAGCTGACCCGTGAGAGATCAGACAATCACGTTCCATTTCACC 21747 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| |||||||| | ||| || ||||| || || || || || Sbjct 21746 CATACGCAGACCACCTTCGCGAGCACGACCTTCCATGGGCTGGCGTGTCAGCATAGTCAC 21687 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| ||||| || ||| || | ||||||||||| || ||||||||||| Sbjct 21686 GGGACCACGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAA 21627 Query 251643 TGCGGGACCGATGAAGAT 251660 | ||| || || ||||| Sbjct 21626 CGTGGGTCCAATAAAGAT 21609 >seq97 Length=26941 Score = 84.2 bits (92), Expect = 6e-11 Identities = 141/203 (69%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 60137 AATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCA 60196 |||| |||||||||||| | | || || |||||||||||||| | ||| || ||| Sbjct 14198 AATT-TGTGAAAATATAACGAGAGCTGGCCGCATCCTTGCCACCCATTAAACGCGTACCA 14256 Query 60197 AATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGA 60256 || || ||| | ||| | || | ||||||||| || ||||||| || || | | Sbjct 14257 AACTGACCGATGGGCGACAGAAGGTGAATGTTGTTGCTTCCGACGAAATCCTGTGCCATA 14316 Query 60257 CCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACA 60316 || ||| || | ||||| ||| |||||||| || |||| |||||||| || Sbjct 14317 TTCACGATACAGCCCTGCAAACTTTGTTCGCCGTGATGGTACGCAGAGTGTTCTGACACG 14376 Query 60317 TATCCACTGAATTGTGCGACTTT 60339 || ||| | ||||||||| || Sbjct 14377 TAGCCAGCCAGTTGTGCGACCTT 14399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471741792194740