Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1798 95.1 1e-13 seq2176 86.0 8e-11 seq185 86.0 8e-11 >seq1798 Length=46339 Score = 95.1 bits (104), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || ||||| ||| ||||||| || | || || || ||||| |||||||||||||| Sbjct 23834 GTCACGTGTGTGATCCGCAACGCACCAGTGGGTCTGGGTGAGCCATGCTTTGACAAGATG 23893 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 | || | || || ||||||||| |||| |||||||| |||||||| || || |||||| Sbjct 23894 CAAGCTGTTCTGGCGCACGCCATGATGTCCATCCCGGCTACCAAGGGTTTTGAAATTGGC 23953 Query 19185 AGCGGGTTT 19193 ||||||| Sbjct 23954 -TCGGGTTT 23961 >seq2176 Length=14793 Score = 86.0 bits (94), Expect = 8e-11 Identities = 155/221 (70%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGT-GCCGA--TC 1254404 ||||| || || | | || || ||||| || |||||||||||||| | | | | || Sbjct 12519 GCCAGCTCACCCGGTAGCATGAGACGCACAGCCGTCTGGATCTCGCGACTCGACAACGTC 12460 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 | || |||||| | ||| || |||||| || | ||||||| |||| ||| Sbjct 12459 GACTT---CTTGTTGTAACGCGACAACTTGCCGGCTTCCGACGCGATGCGCTCGAAAATG 12403 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACAT--CGA-CTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||| || |||||||| | |||||| || ||| || |||||| |||||| Sbjct 12402 TCGTTGATGAATGAGTTCATAATCGACATACCGCGCTTACTG---ATGCCCGTCTCGGGG 12346 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||| || ||||| ||||||||| | | ||||||||| Sbjct 12345 TGCACTTGACGCAGCACTTTGTAGATGTAAGTCGAGTACGA 12305 >seq185 Length=10224 Score = 86.0 bits (94), Expect = 8e-11 Identities = 191/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| || |||||||||||||| || || | |||||| | || ||||| || Sbjct 2074 TGGTCCACGTATCGGGCCGTGTCGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAG 2015 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 || || ||||| | ||| | | ||| || | |||||| || ||| Sbjct 2014 GAACCATTAGTGCCACGAATATAGCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCA 1955 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || ||| | ||||| ||| ||| || || || | ||||| || || || || Sbjct 1954 ATCCCACCAGCCCATTTGGAAATGCACGCACATTGCTTCAATGTGTCATAAATACCTTCA 1895 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||| ||| | | | ||| ||||| || ||| ||| | | || || Sbjct 1894 ATCGAATCATCCTGCATAGCTAGTAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCA 1835 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACAT 1630352 || || || | ||| |||||||| || || |||| | | ||||| Sbjct 1834 GCATTAAACAACGTTGGCGTCGCATGAGTAAAAAACTTCTGAGACAT 1788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106809299974340