Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3868 114 8e-21 >seq3868 Length=24320 Score = 114 bits (126), Expect = 8e-21 Identities = 145/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||||||||| || |||||||| || | || |||| ||||| ||||| || || |||| Sbjct 11104 CCTTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 11045 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| ||||||||||| | || | || |||||||| | ||||| || ||||| || Sbjct 11044 TCAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 10988 Query 34908 CTATCGATTCATT----GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | | ||| || || | || |||||||| || || | ||||| Sbjct 10987 -TGTCAATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTC 10929 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 10928 ACAAAGATCTGCATGAT 10912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325676843088380