Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3786 183 4e-41 >seq3786 Length=9249 Score = 183 bits (202), Expect = 4e-41 Identities = 466/695 (67%), Gaps = 17/695 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| ||||| || | |||| |||||||| || | | || | || || || Sbjct 2585 AGTGGCTCTACGTGATTCAAATAGATATGCGCGTCACCAATGACATGGATGAACTCGCCA 2644 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || || || || ||| || || |||| || |||| || |||||||| || || Sbjct 2645 GGTTTCAGTCCTACCACTTGCGCGACCAAACGCGTTAGCAACGCATAGCTGGCAATATTA 2704 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || || |||||||| |||| | |||||||| ||||||||| || || || Sbjct 2705 AATGGCACACCTAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCA 2764 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 || |||||||||||||| || | ||||||||||| || | |||||| | || || Sbjct 2765 TCCGCCACGTAAAACTGACAAAACATGTGGCACGGAGGTAACGCCATTTCATTTAGATCA 2824 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTC 147218 || || ||||| || || | ||| | || | | | || ||||||| | | || | Sbjct 2825 GCCGGATTCCAAGCTGACAGCACAATTCGGCGGTCACT-GGGGTTCGTACGGAGCTTATG 2883 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGT 147277 |||||| |||||||||||||| ||||| | ||| | | | ||| |||| || Sbjct 2884 GATAACATCGGCAAGCTGGTCCACGCCTTGGCCTCTATAG-TCGGCGTGCATGTCCGTGT 2942 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 || |||| ||||| || | ||| || || ||||| || || || || || || || | Sbjct 2943 ACTTGGCACCAAAATGACGCCATTGAAAACCGTATACCGGTCCAAGATCTCCCACCTCAC 3002 Query 147338 TGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCC 147396 ||| | ||||| | | | | ||||| | || || | | ||||||||||| Sbjct 3003 -GTGATTGCAGCCCTCTACTGTCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGGAA 3061 Query 147397 A-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | | | | || || ||| | || | ||| || | |||||||| |||| ||| Sbjct 3062 ATATTCTTCTGCTGA-AGCGTGTGAGCATTTGTGTCACCACTAATGAACCACAGCAACTC 3120 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAA---CTGGTCCCT 147512 || || || | |||||| || |||| || ||||||| ||||| | ||||| Sbjct 3121 TTCGGCCACACCTCGCCAAAACACTTTCTTCGTCGTCAGCAACGGGAAGACATTCTCCCT 3180 Query 147513 CAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTC 147572 ||| | | ||| ||| | ||||||||||||| ||| || ||||| || | || ||| Sbjct 3181 CAGACTAAATCTCATCTGCGCTCCAAACACAGACAACGTCCCGGTGCCTGTTCGGT-CTC 3239 Query 147573 CCTGCGC---GTCCCGTTCTCCAAAATCTCCCTGA 147604 | |||| || || | || |||||||| || || Sbjct 3240 C--GCGCTTTGTTCCTTGCTTCAAAATCTTCCGGA 3272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583458679728000