Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq97 91.5 2e-13 >seq97 Length=26941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 182676 GCGTCCCGAACATTCTTACAT-TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACC 182734 || || ||||| || | ||| ||||| || | |||||| ||||| |||| ||| | || Sbjct 15231 GCTTCACGAACGTT-TAGCATCTTACCTCGCAATGGGAAAACACCATAGTAATCTCTGCC 15289 Query 182735 AACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAG 182794 |||||||| || || |||| || | ||||| || ||||| || || || | ||| || Sbjct 15290 AACGACAGCAAGGCCACCAACAGCAACAGTTTTGGCGGAATCGCCTTCTGTTAGAATCAG 15349 Query 182795 AGTACA--CTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATA 182852 ||| || |||| | || || ||||| || | || || ||||||| ||||||||| Sbjct 15350 AGTGCAATCTTTGCT--TTTCGCTGTACCAGCGTGATTGGCATCATCCAGTTTGGGAATA 15407 Query 182853 CCGGTAA 182859 || |||| Sbjct 15408 CCAGTAA 15414 Score = 82.4 bits (90), Expect = 1e-10 Identities = 168/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| || ||||| || | || || ||||| ||||| || | | || ||||| Sbjct 14048 AACCCGTTCCAATACCGTCACTGCCGTTAACGAGTACCATGGGGATAACCGGAATGTACC 14107 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | || ||||| || || | || || |||||||| || || || | | ||| ||| Sbjct 14108 ACTCCGGTTCGATTGACTGGCCGTCTTCGTCCAAATACTTCAGCACATCATTGTCCAGAG 14167 Query 181744 GATCAAAGA-TCTT-GCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 ||||| ||| ||| ||| | | || || |||||||| ||||| | | | Sbjct 14168 GATCATAGAGTCTACGCGTGAGTTGTTCCAAA--TTTGTGAAAATATAACGAGAGCTGGC 14225 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || || || |||||||| | |||||||||||| ||||| ||| ||||||| ||| Sbjct 14226 CGCATCCTTGCCACCCATTAAACGCGTACCAAACTGACCGATGGGCGACAGAAGGTGAAT 14285 Query 181862 GTTGTT 181867 |||||| Sbjct 14286 GTTGTT 14291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628000441392000