Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq185 201 1e-46 seq3868 132 5e-26 seq3527 113 5e-20 seq3532 109 6e-19 seq5 96.9 4e-15 >seq185 Length=10224 Score = 201 bits (222), Expect = 1e-46 Identities = 654/1005 (65%), Gaps = 23/1005 (2%) Strand=Plus/Minus Query 80041 CGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTG 80100 |||| || ||||| |||||||| || ||||| ||||| |||| | |||||| || || Sbjct 3430 CGCATGTAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGGTG 3371 Query 80101 AGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 || || | || |||| | ||| ||||| || |||||| ||| || ||| || Sbjct 3370 AGTTTACTGATCGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAATGTAA 3311 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGA 80220 || ||||| || |||| || || | | || || || |||||||| ||||| Sbjct 3310 GCACCACGGTCAGCCGACAGATCTAACACCGATTTCTGCTTGATTTCCCACACTGTTTTG 3251 Query 80221 TACACCTTACGAAGCTCCTCTGGAATG---TCCAGATTTTGCACACTGCCACCGTCCTTT 80277 ||| || | | || |||||| | || ||||||||| |||| ||| || Sbjct 3250 TACTTCTCTTTGACATGGTCCGGAATGGTCTTCACCTTTTGCACAGAACCACGGTCGTTC 3191 Query 80278 ACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337 | || || || | || | |||||||| | | || | | ||| ||||||| ||| Sbjct 3190 AGTATCTGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTCTTTCATCAGG 3131 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 | |||||| | || ||||| || || || || || |||| ||| | ||| Sbjct 3130 TACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGACGTG 3071 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 || ||||| | | ||||||||| || ||||||||||| || || || ||||| || Sbjct 3070 TACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGA 3011 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAA 80517 | || | || || || || | ||||||||| | | | ||| ||| | | ||| Sbjct 3010 GCCACTAGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAG 2951 Query 80518 AAATCAACCCCA----ACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGAC 80571 || ||| ||| ||||| ||||||||||| ||| ||||| |||| Sbjct 2950 TCCCAAAGACCAGAGGACGGGGTGACACCCCACATGTCGAACTGGAAGATACCCTTGCTG 2891 Query 80572 GCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGA---C 80628 ||||| || ||| || ||||||||||||||| ||||| | ||| || | Sbjct 2890 GCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGGATGTC 2831 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688 ||||| | || | ||| ||| |||||| | |||||||| | || ||||| Sbjct 2830 TCCATC---GAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGC 2774 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 | ||||||| || ||| | ||||| | || ||||| |||||||| || ||| Sbjct 2773 TCGCTTTCGAACGCATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATG 2714 Query 80749 GCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATT 80807 | | |||||||||||| |||| || | ||| ||||| | || ||||| |||| Sbjct 2713 CCCACAGGGCGGTGGCGCATGTTGGA-CTTTCGAGCCTCTGCAACCGGGTAGTAGTTGAC 2655 Query 80808 ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAA 80867 || || || ||| ||||| || || || ||| || ||||||| || |||| | Sbjct 2654 GTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTA 2595 Query 80868 GTCGAATTGGTTCC--CCTTCACAAA-TGCCGGAAGGCTCAGGGACGCCAGATTGCACAC 80924 |||||| | || ||| |||||| | | || || || ||||||| |||||||| Sbjct 2594 GTCGAA--GACACCGTCCTCCACAAACTTAGGTAAAGC-CACAGACGCCAAGTTGCACAC 2538 Query 80925 GGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAAT 80984 ||||||||| || | ||| |||| | | || |||||| ||| || || Sbjct 2537 GGCCACCTCATCCGGCGACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGAT 2478 Query 80985 TGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 || || || || | |||||| ||||| |||| |||||||| Sbjct 2477 CGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTT 2433 >seq3868 Length=24320 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| | || |||||||| |||||| | || || ||| | Sbjct 10912 ATCATGCAGATCTTTGTGAAGACTTTGACAGGCAAGACCATTACTTTGGACGTGGAGCCG 10971 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || |||||| ||| | ||| ||||| ||||||||||| || ||||| || ||| Sbjct 10972 TCCGACTGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATTCCACCTGAC 11031 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||||| || |||||||| ||||| || || |||| ||||| || | ||||| Sbjct 11032 CAGCAACGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACACTTTCGGACTAC 11091 Query 27583 AATGTCCAAAAGG 27595 ||| | || |||| Sbjct 11092 AATATTCAGAAGG 11104 >seq3527 Length=112193 Score = 113 bits (124), Expect = 5e-20 Identities = 361/553 (65%), Gaps = 9/553 (2%) Strand=Plus/Minus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| | | |||||||||||| || |||||||| | ||| ||| | || | | Sbjct 71349 TGTGGCAAATGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGACTTGG 71290 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | ||||||| || ||| ||| || | | ||| |||| || || || ||| Sbjct 71289 TGCATGATCTCAAGGATTGGAAAACACTTA-CGGACAATGAACGTCATTTTATTAAGCAT 71231 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 || || || || || ||| | ||||| || |||||| ||||||| | | | | || ||| Sbjct 71230 GTGCTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGAACTTT 71171 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATT--TAACG 64555 | || || || || | || || || || | || || | | ||| ||| || || Sbjct 71170 AGCAATGAAGTGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAA--ATTGCTATCG 71113 Query 64556 AAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCG 64615 | | |||||| ||| ||||| || | ||||| | | | || | || |||| | Sbjct 71112 AGAATATTCACTCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGCTGTAG 71053 Query 64616 AGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAAT 64675 |||| ||| || | | ||||| || || | || ||| | || || || | | Sbjct 71052 AGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGCCAATT 70993 Query 64676 GGGCCATCCGGTGGA-TGAATC--GTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTG 64732 |||| || |||| ||| | ||| ||| |||| | | ||||| || |||| Sbjct 70992 GGGCACTCAAGTGGTGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGCGTTTG 70933 Query 64733 CCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGC 64792 | | || ||||| |||||||| ||||| || ||||| ||||| || ||||| || || | Sbjct 70932 CTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAAGAAAC 70873 Query 64793 GGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCC 64852 | || |||||||| ||||| || ||||||||||| || ||| || || || | | Sbjct 70872 GTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGGTATGC 70813 Query 64853 ACCAAGAATTTGC 64865 || || ||||| Sbjct 70812 ACACGGACTTTGC 70800 >seq3532 Length=32361 Score = 109 bits (120), Expect = 6e-19 Identities = 186/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || ||||| ||| ||| ||||| |||||| | | ||||||| | ||| || ||| | Sbjct 21556 GATGGCCTTAAGATTTCGCAGCGTAAGGTGCTGTTCGCCTGCATGAAGCGCAAGCTGACT 21615 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAG--AGCAAACGGCCTATCACC 32101 || || | ||||| ||||| ||| |||| ||| |||| |||| || || ||||| | Sbjct 21616 AGCGAGGTAAAGGTCGCGCAACTGGCGGGTTACT--GCAGTGAGCACACAGCTTATCATC 21673 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 | || || || || | || || ||||| ||| | || ||||||||||| ||| | | Sbjct 21674 ATGGTGAAGCTTCATTACATTCTACAATTGTTAACATGGCCCAGAACTTTGTTGGTTCTA 21733 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||||| | || | ||||| || || ||||| || ||| | || ||||||| Sbjct 21734 ACAACCTTCCACTGCTGTATCCATCCGGCCAATTTGGAACTCGGTTGCAAGGAGGCAAGG 21793 Query 32222 ATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||| || || | || || ||||| || Sbjct 21794 ATGCCGCTAGTCCTCGATATATCTTTAC 21821 >seq5 Length=21317 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||| ||||| || |||||||||||||| || ||||||| ||| Sbjct 17395 GGAATCCCCCCGGACCAGCAACGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGT 17454 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || |||| ||||| || | |||||||| || || | || | || | |||||||| Sbjct 17455 ACGTTAGCGGACTACAACATTCAAAAGGAGTCAACCTTGCACTTGGTGCTACGTCTTCGT 17514 Query 27628 GGTGGA 27633 |||||| Sbjct 17515 GGTGGA 17520 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| ||||| |||||||| ||||| || || || || || | Sbjct 17212 AATGCAGATTTTTGTCAAGACCCTTACGGGCAAGACCATTACGCTCGAAGTGGAATCGGC 17271 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || || |||| | | | ||| ||||||||||||||||| || Sbjct 17272 GGACAGTATTGACACTGTCAAGCAGAAAATTCAGGACAAGGAAGG 17316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570281741902400