Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3786 125 6e-24 >seq3786 Length=9249 Score = 125 bits (138), Expect = 6e-24 Identities = 432/662 (65%), Gaps = 15/662 (2%) Strand=Plus/Plus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 || || || |||| || || |||| || ||||| || | | |||| ||||| || Sbjct 2585 AGTGGCTCTACGTGATTCAAATAGATATGCGCGTCACCAATGACATGGATGAACTCGCCA 2644 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 |||| || || || || || | || ||| || | | |||||||| || ||| Sbjct 2645 GGTTTCAGTCCTACCACTTGCGCGACCAAACGCGTTAGCAACGCATAGCTGGCAATATTA 2704 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 30055 || || || || || |||||||| |||| | |||||| | ||| ||||| || || || Sbjct 2705 AATGGCACACCTAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCA 2764 Query 30056 TCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 || ||||||||||||||| | |||||||||||| | ||||| | || Sbjct 2765 TCCGCCACGTAAAACTGACAAAACATGTGGCACGGAGGTAACGCCATTTCATTTAGATCA 2824 Query 30116 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30175 || ||||| || ||| | || || | ||| ||||| |||| | ||| | Sbjct 2825 GCCGGATTCCAAGCTGACAGCACAATTCGGCGGTC-ACTGGG--GTTCGTACGGAGCT-T 2880 Query 30176 ACGG----CGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30231 | || | | ||||| ||||| || || ||||| || ||||||||| Sbjct 2881 ATGGATAACATCGGCAAGCTGGTCCACGCCTTGGCCTCTATAGTCGGCGTGCATGTCCGT 2940 Query 30232 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30291 ||||| || || ||||| | ||| || || ||||| |||||||| || |||||| | || Sbjct 2941 GTACTTGGCACCAAAATGACGCCATTGAAAACCGTATACCGGTCCAAGATCTCCCACCTC 3000 Query 30292 CCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | ||| | | ||||| || ||||||| | || | || || ||| |||||||||| Sbjct 3001 AC-GTGATTGCAGCCCTCTACTGTCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGG 3059 Query 30351 TTACCCCCTTCT-CAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30409 | ||||| | || ||| | | |||||| || || | ||||||||||| | Sbjct 3060 AAATATTCTTCTGCTGA-AGCGTGTGAGCATTTGTGTCACCACTAATGAACCACAGCAAC 3118 Query 30410 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA--GGGGAAACTGTC-CC 30466 || || | || | |||||| || |||| ||||| || | ||| | || || || Sbjct 3119 TCTTCGGCCACACCTCGCCAAAACACTTTCTTCGTCGTCAGCAACGGGAAGACATTCTCC 3178 Query 30467 TTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCT 30526 | || | | || ||| | |||||||| ||||| || ||||| || | |||| Sbjct 3179 CTCAGACTAAATCTCATCTGCGCTCCAAACACAGACAACGTCCCGGTGCCTGTTCGGTCT 3238 Query 30527 CC 30528 || Sbjct 3239 CC 3240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406290493329840