Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3868 136 9e-27 seq5 84.2 5e-11 >seq3868 Length=24320 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || || || || |||| ||| || | |||||||||||||||||||| || ||||| Sbjct 11102 TTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 11043 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || ||||| |||||||| |||| ||||||||||||||||| || || || || || || Sbjct 11042 AGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10983 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| ||| || || || || | ||| || ||||| || || | |||||| ||||| Sbjct 10982 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAAAG 10923 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 10922 ATCTGCAT 10915 >seq5 Length=21317 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||| || | ||| | || ||||| ||||| ||||| || ||||| | || Sbjct 17514 ACGAAGACGTAGCACCAAGTGCAAGGTTGACTCCTTTTGAATGTTGTAGTCCGCTAACGT 17455 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || || ||||| || ||||| ||||| || || | ||| Sbjct 17454 ACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGGATTCC 17395 Query 211013 T 211013 | Sbjct 17394 T 17394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159092296427300