Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3916 199 9e-46 seq3868 132 1e-25 >seq3916 Length=40521 Score = 199 bits (220), Expect = 9e-46 Identities = 217/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| |||||||||| ||||| | | |||| ||| | Sbjct 14144 AACTTTATATTTAATTTTTAGTGCTTTTGCTGGTATTATCGGTACAACACTTTCGATGTT 14085 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||| | || ||| |||||| || | || ||| ||| | || Sbjct 14084 AATTAGAATTGAATTATCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATA 14025 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| | |||| || || || ||| ||||| |||| ||||| |||||||| | | | Sbjct 14024 TAATGTTGTAGTTACTGCTCACGCTTTTATTATGGTTTTTTTTTTAGTTATGCCTGCTTT 13965 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || || |||||||||||||| ||||||||||||||||| Sbjct 13964 AATTGGAGGTTTTGGTAATTGGTTTGTACCTTTAATGATTGGAGCTCCTGATATGGCTTT 13905 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 13904 TCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 13857 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 20436 AGCCTATTATCTTTAGCTGATTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 20377 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| || | ||||| ||||||||| |||| || ||||||| |||||||||||||| | Sbjct 20376 CCAAACTTTTTTAAAGG-CAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 20318 Query 6865 GTAAT 6869 | ||| Sbjct 20317 GCAAT 20313 Score = 109 bits (120), Expect = 1e-18 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 19749 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 19808 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| || || | ||||| ||| | || Sbjct 19809 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATCATACTTTTCAGGCGGAGTGCTT 19868 Query 7850 TACGCGTTAGCTTAATTA-ATATAAAAA 7876 ||||||||||| |||| || |||||| Sbjct 19869 AACGCGTTAGCT--ATTATATCTAAAAA 19894 Score = 105 bits (116), Expect = 2e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||||||||| || || ||||| || || ||||| |||||||| ||||| Sbjct 384 AAAATTTGTCCATCAGTAATTGAAATTACATTAGTTGGTATATATGCAGAAACGTCACCA 443 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || ||||| ||||||| || |||||||||| ||| |||| Sbjct 444 GCTTGGGTTTCAATAATCGGTAAAGCTGTTAAAGAACCACCACCAATTTTTCTATT 499 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 23643 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 23584 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 23583 GTAACATGATGTATAGGGTCTGACAC 23558 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| || ||||| || |||||||||||||| | | ||||| || || ||||| Sbjct 13460 TTCAGGATGGCCGAAAAACCAAAATAAATGTTGATATAATACGGGATCACCACCACCTGA 13519 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||| ||| |||| |||||| ||||||| ||||||||| |||| Sbjct 13520 TGGGTCATAAAACGAAGTATTTAAATTTCGATCAGTTAATAACA 13563 >seq3868 Length=24320 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| || ||||| ||||| || |||||||||||| Sbjct 11072 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCTTCC 11013 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| ||| || | |||||||| || || Sbjct 11012 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCAGTCGGACGGCTCCACGTCCAAAGTA 10953 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||| |||||||| || Sbjct 10952 ATGGTCTTGCCTGTCAAAGTCTT 10930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192469777189880