Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3527 172 5e-38 >seq3527 Length=112193 Score = 172 bits (190), Expect = 5e-38 Identities = 540/827 (65%), Gaps = 12/827 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || || || ||||| || || || ||||||| || ||| || | ||||| | || || Sbjct 70521 ACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGCGAGATCATATCCATCCAGTCGAAT 70580 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCA-CACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 ||||| | || | ||| || || ||| || | |||| |||||||| || Sbjct 70581 GGATTCTTGGCATGATAAATCTTGGCAACACCC-AGTGAGTATAGCAGACGGTCAGCCAC 70639 Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC-ACAGGTAGCG 4449 || || || ||||| | ||||||| | |||| || ||||| | ||| ||||| |||| Sbjct 70640 GAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAG-CTCGACAGGAAGCG 70698 Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 || || |||||| || || || || || || || || || || | | | Sbjct 70699 AGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCACGAATAATCTCGTGCACACGAC 70758 Query 4510 CTTTAGATGG---TTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGC 4565 | | ||| ||| || || | || || | ||| | ||| ||||| || ||| Sbjct 70759 ---TCGCTGGCAATTTGTTAACCA-GTTTCGAGTACATGAGACAAGCAAAGTCCGTGTGC 70814 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 | |||||| || | ||||| || ||||| || || | | || ||||| | ||| | Sbjct 70815 ATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCAGACCACGT 70874 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || || |||||||| |||| | || || ||||| ||||| ||||||||||| | ||| Sbjct 70875 TTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTACCGAAGCA 70934 Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 ||||| | || || | || |||| | | | | ||| || | |||||| Sbjct 70935 AACGCCAATAGACGTTCCGCGTACGATGACACACGGGGGTCACACCACTTGAGTGCCCAA 70994 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805 || ||||| ||||| || || || || || | ||||| | | | | ||| || Sbjct 70995 TTGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGATCTTTCTCT 71054 Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 | | | | |||||| || || || || || ||| | || || || ||||| || Sbjct 71055 ACAGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGAATATTCTCG 71114 Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925 |||||||| ||||| ||||||||||| | |||||| | |||||| ||||| || | ||| Sbjct 71115 ATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTAAAG 71174 Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 | | | || || || || || || ||||||||||||||||| || | ||||| Sbjct 71175 TTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACATGC 71234 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 ||||| | |||| | | ||||| ||||||| | | ||| | || Sbjct 71235 TTAATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAGATCATGCACCAAG 71294 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 || | ||||| | ||||| ||||| || || ||||| |||||||| Sbjct 71295 TCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTCTTGTACAT 71341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427028677238660