Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3527 224 1e-53 seq185 120 4e-22 >seq3527 Length=112193 Score = 224 bits (248), Expect = 1e-53 Identities = 591/891 (66%), Gaps = 21/891 (2%) Strand=Plus/Plus Query 47855 ATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 47914 ||| || |||||||||||||||||||| || || ||||||| | || || | ||||| Sbjct 70511 ATACTCGCCCACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGCGAGATCATATCCAT 70570 Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCT 47974 | || |||||||| |||| |||||| || || || | | | | ||| | Sbjct 70571 CCAGTCGAATGGATTCTTGGCATGATAAATCTTGGCAACACCCAGTGAGTATAGCAGACG 70630 Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 || || ||||| || || || ||| | | | | ||||| || || || | || Sbjct 70631 GTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAGCTCGAC 70690 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC--ACTATTATCGAT 48092 || || | || | |||||| || || || || |||||||| | || | ||| | Sbjct 70691 AGGAAGCGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCACGAATAATCTCG-T 70749 Query 48093 GTTACCGTTTC-CT--CACTTGGTGGATACAACAAATGTTTAA-ACATTAAACATGCAAA 48148 | || || || || || || ||| | | | | |||| | ||| ||||| Sbjct 70750 GCACACGACTCGCTGGCAATTTGTT-----AACCAGTTTCGAGTACATGAGACAAGCAAA 70804 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 || || | ||||||||| | |||||||| ||||| || || | ||||| ||||| Sbjct 70805 GTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCAT 70864 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 || |||||||| ||||||||||| || | ||| || ||||| ||||| |||||||| Sbjct 70865 CAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTC 70924 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTT- 48327 ||| | ||||| || || | || |||| | | | | |||| | Sbjct 70925 TACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACACGGGGGTCACACCACTT 70984 Query 48328 --GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||||||| || |||||||| ||||| || || || || |||||| | |||| Sbjct 70985 GAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATG 71044 Query 48386 GtttttttC-ATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444 | ||| || | || |||| || || ||||| || | || ||| | || |||| Sbjct 71045 ATCTTTCTCTACAGCATTCTT-AATATATGTATCAATAAGCAGTGAATAGACCTCCGAGT 71103 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 ||||||| || || || || ||||| |||||||| || | ||||| | | || || | Sbjct 71104 GAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTT 71163 Query 48505 CCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 | | | ||| ||||| || | ||||||||| || || |||||||| || |||||||| Sbjct 71164 CATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAA 71221 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | ||||| |||||||||| ||| ||| || ||| | ||||| || |||| Sbjct 71222 GGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAG 71281 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 ||| | | || | ||||| |||||||| || || ||||| ||||| || ||||| Sbjct 71282 ATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTCTTGTACAT 71341 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 | ||| | || | | || || || |||| ||||| | ||| || || Sbjct 71342 TTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAACGATTCGGGTT 71392 >seq185 Length=10224 Score = 120 bits (132), Expect = 4e-22 Identities = 779/1241 (63%), Gaps = 26/1241 (2%) Strand=Plus/Minus Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480 ||||| || || || ||||| ||||| || || || | || | || || |||| | Sbjct 2818 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2759 Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 || | | ||||| || ||||| || | |||||||| ||||| || | ||| | || Sbjct 2758 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2699 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 | | | ||||| || ||| |||| || || || || || | ||| |||| || || Sbjct 2698 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2639 Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT 77660 || || | || || || ||| || | || || | || || || || Sbjct 2638 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2579 Query 77661 ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG 77720 |||||| | ||||| | ||| || | || || || || ||||||| | Sbjct 2578 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2519 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 | ||| | |||| ||| || | ||||| || ||| ||||| ||||| || ||| Sbjct 2518 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2459 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 ||| ||| ||| || ||||||| | || ||||| || || || |||||||| Sbjct 2458 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2399 Query 77841 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGT-ATCGCCTCTC 77899 | || | ||| ||| | || || | | || | ||| | ||| || | Sbjct 2398 GCATCTAAAATGCTGAACCATAG--CTGCTGCGCAT-TAATTGTCTTGCGAGCGCGTCCC 2342 Query 77900 TC--TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 || |||| || | ||| ||| || || || |||||||| || | | || Sbjct 2341 TCCTTTTCGTACTTTTCATAAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAGCA 2282 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCAT---CTTCCTTAACTCGTTTCATA 78014 || ||| || || || | || ||| | |||| ||||| || ||||||||| Sbjct 2281 GGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCC---ACCCGTTTCATA 2225 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || |||||||| ||||||||||| |||| || || | || || |||||| || Sbjct 2224 AACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACC- 2166 Query 78075 GTATTCTTTTTA---AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 | |||||| || || |||||||| | | || | |||||| || || | ||| Sbjct 2165 --GTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTAT 2108 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 || || | ||| ||||| || || || || | |||| ||| |||| ||| Sbjct 2107 ATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTA 2048 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251 | || | ||||| ||||| || |||||||| | ||||| || ||| |||||| || Sbjct 2047 AACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTG 1988 Query 78252 CCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 | | || || || || || || || || || || ||| || || || Sbjct 1987 TTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCAC 1928 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || | |||||||| || || ||||| || || |||||| ||| || | | Sbjct 1927 GCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAA 1868 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 ||||| |||| ||| | || |||||| |||||||| || || || | ||||| Sbjct 1867 AAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGA 1808 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTA---TGTCCCAT 78488 ||||| | || | ||| | | | ||| || || | ||| | || | ||| | | Sbjct 1807 GTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTC--T 1750 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTAT-T 78547 || || || |||| || || ||||| | | || || |||| || | || ||| | Sbjct 1749 TG-TGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCA-CGACTTTTCC 1692 Query 78548 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 78607 ||| | || | ||| ||| || | ||||| || || ||||||| || ||| Sbjct 1691 ATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAA 1632 Query 78608 GTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGT 78648 ||| | |||| ||| || |||| ||||| | |||||||| Sbjct 1631 GTCCCGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTTGT 1591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694633892892800