Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3868 127 4e-24 seq3839 111 3e-19 seq5 91.5 3e-13 seq97 87.8 4e-12 >seq3868 Length=24320 Score = 127 bits (140), Expect = 4e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || || |||||||| | ||| || |||||||| || || || || || ||||||||| Sbjct 11102 TTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 11043 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | |||||| |||||| |||||||| |||||||| ||||| || ||||| || | || Sbjct 11042 AGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTC 10984 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||| || | || || || | ||| || ||||| || ||||||||||| || || Sbjct 10983 AATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAAA 10924 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 10923 GATCTGCAT 10915 >seq3839 Length=24414 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| || || |||||||||| ||| ||| ||| Sbjct 20269 TCCTTGTCCTCACCGGACTGGAAACGCCACTGAATATACTGATTGGCTGTCTCGTCGAGA 20328 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| |||||||| |||| |||||| |||||| Sbjct 20329 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCAAAACGCATGGAAGGATGC 20388 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || || | || | || | || || || |||| ||||| || || | Sbjct 20389 TTCCACACCTGTCCACTCGTCGGCTCAACCTCACCAGTCAGCATCTTAATCAGCGTCGAT 20448 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 20449 TTACCGGCACCGTT 20462 >seq5 Length=21317 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || || || || ||||| ||||||||||| || Sbjct 17519 CCACCACGAAGACGTAGCACCAAGTGCAAGGTTGACTCCTTTTGAATGTTGTAGTCCGCT 17460 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 | ||| ||||||||||| || || || || |||||||||| |||||| ||||| Sbjct 17459 AACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTC 17407 >seq97 Length=26941 Score = 87.8 bits (96), Expect = 4e-12 Identities = 237/363 (65%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 273584 AATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGA 273643 |||||| ||| |||||||| | ||||| | |||||||| || ||||||||| Sbjct 14007 AATAATGTCTAGTGGGTTGTAGTTGGGAACAGAGCTGGACCAACCCGTTCCAATACCGTC 14066 Query 273644 AGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATC 273703 | || || || || | | ||||||| || | || | || || || ||| | Sbjct 14067 ACTGCCGTTAACGAGTACCATGGGGATAACCGGAATGTACCACTCCGGTTCGATTGACTG 14126 Query 273704 ACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGT 273763 || || |||| | ||||||| || | ||| ||| | | | | | | ||||| Sbjct 14127 GCCGTCTTCGTCCAAATACTTCAGCACATCATTGTCCAGAGGATCATAGAGTCTACGCGT 14186 Query 273764 CTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAG 273823 | | | || || |||||||| || | | || || ||||||||||| | Sbjct 14187 GAGTTGTTCCAAATTTGTGAAAATATAACGAGAGCTGGCCGCATCCTTGCCACCCATTAA 14246 Query 273824 CCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATC 273883 | || |||||||||||| |||| || || ||||||||||| |||||| |||| Sbjct 14247 ACGCGTACCAAACTGACCGATGGGCGACAGAAGGTGAATGTTGTTGCTTCCGACGAAATC 14306 Query 273884 CTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTG 273943 ||| ||||||||||||||| ||||| | | |||||||| || || || ||| Sbjct 14307 CTGTGCCATATTCACGATACAGCCCTGCAAACTTTGTTCGCCGTGATGGTACGCAGAGTG 14366 Query 273944 TTC 273946 ||| Sbjct 14367 TTC 14369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046685286389080