Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1101 122 2e-22 seq3639 102 2e-16 seq3526 102 2e-16 seq1347 102 2e-16 seq2 86.0 1e-11 >seq1101 Length=81374 Score = 122 bits (134), Expect = 2e-22 Identities = 298/444 (67%), Gaps = 6/444 (1%) Strand=Plus/Plus Query 230169 ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228 ||||| || |||||||| | || | | | || || || ||| | || ||||| Sbjct 7413 ATCGTACGCAGAGCGTCTATTGGCGTTTGCCTCGGTGGAGGGCATTTTCTTCTCCGGATC 7472 Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288 |||||| |||||||||||||| ||| ||| | |||||||| ||| | | || || Sbjct 7473 CTTCTGCTCCATCTTTTGGCTGAAGAAACGTGGTCTTATGCCTGGTCTCAGCTTCTCAAA 7532 Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAA 230348 |||| | || ||||| || ||||| | || | || | || |||||||| || Sbjct 7533 CGAGCTAATTAGTCGTGATGAGGGCATGCACACGGACTTTGCTTGTCTCATGTATTCCAA 7592 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAA-ATCATTACAGAAGCAGTTGAAA 230407 || || ||| | || ||| ||| || | || ||| || || || || Sbjct 7593 ACTGGTTAATAAGTTGCCGGA-GAGTCGGGTGCACGAGATTATTCGGGATGCTGTGACAA 7651 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 || | ||||| | ||||| | | ||| ||||| || |||||||||||| | | | Sbjct 7652 TTGAGCACGAGTTTGTGCGTGACTC-ACTCCCTGTCGAGCTCATTGGCATGAACTCGGCA 7710 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTG-CACTTGGTTACGA 230525 || ||| | |||||||| || ||||| || ||||| || ||| |||| ||| | Sbjct 7711 CTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGT-TTACTGTACTCACTGGGTGTTGC 7769 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 || | || || | |||||||| || | | ||||| | |||||||| ||||| || Sbjct 7770 CAAGATTTATCACGCCAAGAACCCATTCGACTGGATGGATATGATTTCGCTACAAGGCAA 7829 Query 230586 GACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||| |||||||||||||| Sbjct 7830 GACCAACTTTTTCGAAAAGCGTGT 7853 >seq3639 Length=157838 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || ||||||||||| ||| ||||||||||| || || ||||| || Sbjct 103141 GGGGAAGCCCTCTAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACC 103200 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || |||||||||||||| |||| || || || ||| | || | |||||||| Sbjct 103201 GTTGGGACCACACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAA 103260 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 320012 ||||| | ||||| || || || || || ||||| Sbjct 103261 CAGAATCATACCACCGTAAGCAAGCGAGAACTCACA 103296 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||| ||||| || | ||||| || || ||||| |||| |||| ||| ||| Sbjct 102284 TCCTTGTCCTCACCAGACTGGAAGCGCCACTGAATGTACTGATTGGCTGTCTCGTCGAGA 102343 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || ||| |||||||| ||||| |||||||||||||| |||| |||||| || || Sbjct 102344 TGCGACTCAATGTGGTGAAAAGCGTGCTGTGCCACGTAGGCAAAACGCATGGAAGGGTGT 102403 Query 319111 TTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTT 319170 ||||| || || | || | || | || || || |||| |||||| || || Sbjct 102404 TTCCACACCTGTCCACTCGTCGGCTCAACTTCACCAGTCAGCATCTTAATCAGCGTCGAC 102463 Query 319171 TTCCCCGCACCGTTTTCGCCCACCACA 319197 || || |||||||| ||| | |||| Sbjct 102464 TTACCGGCACCGTTGGGGCCAAGCACA 102490 >seq3526 Length=28024 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || ||||||||||| ||| ||||||||||| || || ||||| || Sbjct 16789 GGGGAAGCCCTCTAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACC 16848 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || |||||||||||||| |||| || || || ||| | || | |||||||| Sbjct 16849 GTTGGGACCACACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAA 16908 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 320012 ||||| | ||||| || || || || || ||||| Sbjct 16909 CAGAATCATACCACCGTAAGCAAGCGAGAACTCACA 16944 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||| ||||| || | ||||| || || ||||| |||| |||| ||| ||| Sbjct 15932 TCCTTGTCCTCACCAGACTGGAAGCGCCACTGAATGTACTGATTGGCTGTCTCGTCGAGA 15991 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || ||| |||||||| ||||| |||||||||||||| |||| |||||| || || Sbjct 15992 TGCGACTCAATGTGGTGAAAAGCGTGCTGTGCCACGTAGGCAAAACGCATGGAAGGGTGT 16051 Query 319111 TTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTT 319170 ||||| || || | || | || | || || || |||| |||||| || || Sbjct 16052 TTCCACACCTGTCCACTCGTCGGCTCAACTTCACCAGTCAGCATCTTAATCAGCGTCGAC 16111 Query 319171 TTCCCCGCACCGTTTTCGCCCACCACA 319197 || || |||||||| ||| | |||| Sbjct 16112 TTACCGGCACCGTTGGGGCCAAGCACA 16138 >seq1347 Length=72235 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| Sbjct 66343 GCCCGTCTAGCTCAGTCGGTAGAGCGCATGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 66284 Query 165770 CCCACG 165775 |||||| Sbjct 66283 CCCACG 66278 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| Sbjct 66642 GCCCGTCTAGCTCAGTCGGTAGAGCGCATGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 66583 Query 165770 CCCACG 165775 |||||| Sbjct 66582 CCCACG 66577 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||| ||||| ||||| || |||| ||||||||||||||||| Sbjct 67445 TGCCCGTCTAGCTCAGTCGGTAAAGCGCAAGACTCTTTATCTTGTGGTCGTGGGTTCGAG 67386 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 67385 CCCCGCGGTGGGC 67373 >seq2 Length=367671 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 220033 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 220092 Query 165771 CCACG 165775 ||||| Sbjct 220093 CCACG 220097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057769583219450