Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1101 114 1e-20 seq446 113 5e-20 >seq1101 Length=81374 Score = 114 bits (126), Expect = 1e-20 Identities = 562/878 (64%), Gaps = 36/878 (4%) Strand=Plus/Minus Query 16679 TAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATG 16738 || |||| || || |||||||||||||| || ||||| | ||| || || | ||||| Sbjct 7862 TACTCGCCCACACGCTTTTCGAAAAAGTTGGTCTTGCCTTGTAGCGAAATCATATCCATC 7803 Query 16739 AAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCT 16797 | || || || || | || ||| || || || | |||||| | | ||| | Sbjct 7802 CAGTCGAATGGGTTCTTGGCGTGATAA-ATCTTGGCAACACCCAGTGAGTACAGTAAACG 7744 Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 || || || || || || || || ||||| | | | ||||||| || || || || Sbjct 7743 GTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAGCTCGAC 7684 Query 16858 CGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTA 16915 || || | || || ||| |||| |||| || || || ||| |||||| | Sbjct 7683 AGGGAGTGAGTCACGCACAAACTCGT-GCTCAATTGTCACAGCATCCCGAATAATCTCGT 7625 Query 16916 GCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTT---AAACATCAGACATGCGAAA 16972 ||| | || ||| | | ||| ||| |||| | |||| ||||| || || Sbjct 7624 GCACC-CGACTCTCCGGCAACTTAT---TAACCAGTTTGGAATACATGAGACAAGCAAAG 7569 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 || || | ||||| || | || || || ||||| || || | | || ||||| Sbjct 7568 TCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCAGGCATA 7509 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || |||||||| | |||||| || | | ||| || || || ||||| || ||||| Sbjct 7508 AGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATGCCCTCC 7449 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACG-------TCGCGTCTTTGTTACGAAT 17145 || || |||||||| | || || || ||||||| ||||| || || Sbjct 7448 ACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGG----GTCACA--- 7396 Query 17146 CCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 ||| || | |||| | |||||| | || | || ||||| || ||||| | Sbjct 7395 CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCAG 7336 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATT-ATATACGTATCGATGAGTAGGCTGTACATTT 17264 | | || || || | || || ||||| ||||| || || || || | | Sbjct 7335 CAGATGGTCCTTCTC-TCCAGCATTCTTGATATATGTATCAATAAGCAGCGAATAGACCT 7277 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 | ||||| || ||||| || || |||||||| ||||| ||||| || ||||| | || || Sbjct 7276 CCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTT 7217 Query 17325 GAACTTCCACG-TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 | ||||| | || ||| | || || ||||||||||| ||||| ||||| || || Sbjct 7216 GCACTTCGTTGCTAAAATTCATG-GCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCA 7158 Query 17384 AAAAACGCCAATATATGCTTAATGAAAT---ATTTTTCGTCCGGTGTAAGAACGCGCCAG 17440 ||||| || | | |||||| | ||||| || | |||| || || | |||| Sbjct 7157 AAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCC---GTGAGTTTGTCCCAG 7101 Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500 ||||| | ||| | | | || | || |||| ||||| || |||| | ||||| Sbjct 7100 TCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTCGGCCTTC 7041 Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||| | ||| | || || | || ||||| || Sbjct 7040 TTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAA 7003 >seq446 Length=286769 Score = 113 bits (124), Expect = 5e-20 Identities = 386/595 (65%), Gaps = 24/595 (4%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| ||||| || || || || | ||||| || | || || || ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | | || ||||| || |||||||| | |||||| || | | ||| || || | Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 150896 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG-------TC 17128 | ||||| || ||||| || || |||||||| | || || || ||||||| || Sbjct 150895 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 150836 Query 17129 GCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATC 17188 ||| || || ||| || | |||| | |||||| | || | || ||| Sbjct 150835 GCGG----GTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATC 150783 Query 17189 GTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATT-ATATACGTATCGAT 17247 || || ||||| | | | || || || | || || ||||| ||||| || Sbjct 150782 GTATCAATGGCACGCAGCAGATGGTCCTTCTC-TCCAGCATTCTTGATATATGTATCAAT 150724 Query 17248 GAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCA 17307 || || || | || ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 150723 AAGCAGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCA 150664 Query 17308 TCGGGCTTCCGCTATTTGAACTTCCACG-TAGAATCGTTCCGCTAGATTTTCGTTCACGA 17366 || ||||| | || ||| ||||| | || ||| | || || ||||||||||| | Sbjct 150663 GCGAGCTTCAGGTACTTGCACTTCRTTGCTAAAATTCATG-GCGAGGTTTTCGTTCACAA 150605 Query 17367 TGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT---ATTTTTCGTCCG 17423 |||| ||||| || || ||||| || | | |||||| | ||||| || | |||| Sbjct 150604 TGCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCC- 150546 Query 17424 GTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAA 17483 || || | ||||||||| | ||| | | | || | || |||| ||||| | Sbjct 150545 --GTGAGTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGA 150488 Query 17484 AACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | |||| | ||||| || ||||| | ||| | || || | || ||||| || Sbjct 150487 ACGAAGCCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAA 150433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517519625680200